ExpEdit specifications

Information


Unique identifier OMICS_05861
Name ExpEdit
Interface Web user interface
Restrictions to use None
Input data Mapping data (in SAM/BAM format) or directly sequence reads [in FASTQ/short read archive (SRA) format] can be provided as input to carry out a comparative analysis against a large collection of known editing sites collected in DARNED database as well as other user-provided potentially edited positions.
Output data Results are shown as dynamic tables containing University of California, Santa Cruz (UCSC) links for a quick examination of the genomic context.
Programming languages PHP, Python
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Graziano Pesole <>

Publication for ExpEdit

ExpEdit institution(s)
Dipartimento di Biochimica e Biologia Molecolare ‘E Quagliariello’, Università di Bari, Bari, Italy
ExpEdit funding source(s)
Ministero dell'Istruzione, Università e Ricerca (MIUR, Italy); ‘Laboratorio di Bioinformatica per la Biodiversità Molecolare' (Progetto FAR, DM19410)’ Progetto Strategico Regione Puglia PS_012; AriSLA - Fondazione Italiana di Ricerca per la SLA

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