ExpEdit statistics

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ExpEdit specifications

Information


Unique identifier OMICS_05861
Name ExpEdit
Interface Web user interface
Restrictions to use None
Input data Mapping data (in SAM/BAM format) or directly sequence reads [in FASTQ/short read archive (SRA) format] can be provided as input to carry out a comparative analysis against a large collection of known editing sites collected in DARNED database as well as other user-provided potentially edited positions.
Output data Results are shown as dynamic tables containing University of California, Santa Cruz (UCSC) links for a quick examination of the genomic context.
Programming languages PHP, Python
Computer skills Basic
Stability Stable
Maintained No

Maintainer


This tool is not available anymore.

Publication for ExpEdit

ExpEdit in publications

 (5)
PMCID: 4260807
PMID: 25492982
DOI: 10.1016/j.simyco.2014.07.004

[…] (bres.) henn. apud wehmer, centrbl. bakteriol. parasitk. 2 18: 294. 1907 ≡ ustilago welwitschiae bres., bol. soc. brot. 11: 68. 1893 ≡ sterigmatocystis welwitschiae (bres.) henn., kunene-sambesi expedit.: 168. 1903. [mb490584]. — herb.: cbs 139.54. ex-type: cbs 139.54. its barcode: fj629340. (alternative markers: bena = fj629291; cam = kc480196; rpb2 = n.a.). aspergillus wentii wehmer, […]

PMCID: 3665839
PMID: 23723998
DOI: 10.1371/journal.pone.0063769

[…] (bresadola) hennings apud wehmer.,  =  ustilago welwitschiae bres. in saccardo, bolm soc. broteriana 11∶9–90. 1893 =  sterigmatomyces welwitschiae (bres.) henn. in h. baum kunene-zambesi expedit., p. 168, 1903 =  aspergillus welwitschiae (bres.) henn. apud wehmer in centrbl. bakteriol. parasitk. ii, 18∶294, 1907,  =  aspergillus awamori sensu perrone et al. ., epitype: cbs 139.54, […]

PMCID: 3655661
PMID: 23737728
DOI: 10.1155/2013/804505

[…] retrieval from human and model organisms. mir-editar [] contains predicted mirna binding sites that could be modified by a-to-i-editing, as well as a-to-i editing-induced mirna binding sites. both expedit [] and rna-express [] are the annotation tools of rna editing prediction for rna-seq data. for organellar rna editing resources, gobase [], redidb [], and prepact 2.0 [] contain the interface […]

PMCID: 3579159
PMID: 22525274
DOI: 10.1038/onc.2012.125

[…] target genes potentially involved in astrocytoma. we took advantage of a newly available database that includes validated or predicted editable substrates (darned; http://darned.ucc.ie) and of the expedit web server (http://www.caspur.it/expedit). no editing events were predicted in p21, p27 and skp2 transcripts (data not shown). among different possible adar2 target genes identified (data […]

PMCID: 3095179
PMID: 21594075
DOI: 10.3897/zookeys.94.1161

[…] zsic to clarify the situation., laccoporus viator: holotype, „allotype” and 10 other paratypes in bmnh. we studied 2 ♂♂ paratypes labelled: „co-type”, „gyangtse. / 13,000 ft. / june 1904. / tibet expedit. / h.j. walton. / 1903–172.”, „laccoporus / viator. b-b. / co-type.”., 20 exs (sysu): 2 ♂♂ china: xizang, dingri (tering), 4300 m, 2.vi.1974, leg. xuezhong zhang, academia sinica; 1 ♀ […]


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ExpEdit institution(s)
Dipartimento di Biochimica e Biologia Molecolare ‘E Quagliariello’, Università di Bari, Bari, Italy
ExpEdit funding source(s)
Ministero dell'Istruzione, Università e Ricerca (MIUR, Italy); ‘Laboratorio di Bioinformatica per la Biodiversità Molecolare' (Progetto FAR, DM19410)’ Progetto Strategico Regione Puglia PS_012; AriSLA - Fondazione Italiana di Ricerca per la SLA

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