ExpEdit statistics

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Popular tool citations

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Associated diseases

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ExpEdit specifications


Unique identifier OMICS_05861
Name ExpEdit
Interface Web user interface
Restrictions to use None
Input data Mapping data (in SAM/BAM format) or directly sequence reads [in FASTQ/short read archive (SRA) format] can be provided as input to carry out a comparative analysis against a large collection of known editing sites collected in DARNED database as well as other user-provided potentially edited positions.
Output data Results are shown as dynamic tables containing University of California, Santa Cruz (UCSC) links for a quick examination of the genomic context.
Programming languages PHP, Python
Computer skills Basic
Stability Stable
Maintained No


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Publication for ExpEdit

ExpEdit in publications

PMCID: 4260807
PMID: 25492982
DOI: 10.1016/j.simyco.2014.07.004

[…] (bres.) henn. apud wehmer, centrbl. bakteriol. parasitk. 2 18: 294. 1907 ≡ ustilago welwitschiae bres., bol. soc. brot. 11: 68. 1893 ≡ sterigmatocystis welwitschiae (bres.) henn., kunene-sambesi expedit.: 168. 1903. [mb490584]. — herb.: cbs 139.54. ex-type: cbs 139.54. its barcode: fj629340. (alternative markers: bena = fj629291; cam = kc480196; rpb2 = n.a.). aspergillus wentii wehmer, […]

PMCID: 3665839
PMID: 23723998
DOI: 10.1371/journal.pone.0063769

[…] (bresadola) hennings apud wehmer.,  =  ustilago welwitschiae bres. in saccardo, bolm soc. broteriana 11∶9–90. 1893 =  sterigmatomyces welwitschiae (bres.) henn. in h. baum kunene-zambesi expedit., p. 168, 1903 =  aspergillus welwitschiae (bres.) henn. apud wehmer in centrbl. bakteriol. parasitk. ii, 18∶294, 1907,  =  aspergillus awamori sensu perrone et al. ., epitype: cbs 139.54, […]

PMCID: 3655661
PMID: 23737728
DOI: 10.1155/2013/804505

[…] retrieval from human and model organisms. mir-editar [] contains predicted mirna binding sites that could be modified by a-to-i-editing, as well as a-to-i editing-induced mirna binding sites. both expedit [] and rna-express [] are the annotation tools of rna editing prediction for rna-seq data. for organellar rna editing resources, gobase [], redidb [], and prepact 2.0 [] contain the interface […]

PMCID: 3579159
PMID: 22525274
DOI: 10.1038/onc.2012.125

[…] target genes potentially involved in astrocytoma. we took advantage of a newly available database that includes validated or predicted editable substrates (darned; http://darned.ucc.ie) and of the expedit web server (http://www.caspur.it/expedit). no editing events were predicted in p21, p27 and skp2 transcripts (data not shown). among different possible adar2 target genes identified (data […]

PMCID: 3095179
PMID: 21594075
DOI: 10.3897/zookeys.94.1161

[…] zsic to clarify the situation., laccoporus viator: holotype, „allotype” and 10 other paratypes in bmnh. we studied 2 ♂♂ paratypes labelled: „co-type”, „gyangtse. / 13,000 ft. / june 1904. / tibet expedit. / h.j. walton. / 1903–172.”, „laccoporus / viator. b-b. / co-type.”., 20 exs (sysu): 2 ♂♂ china: xizang, dingri (tering), 4300 m, 2.vi.1974, leg. xuezhong zhang, academia sinica; 1 ♀ […]

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ExpEdit institution(s)
Dipartimento di Biochimica e Biologia Molecolare ‘E Quagliariello’, Università di Bari, Bari, Italy
ExpEdit funding source(s)
Ministero dell'Istruzione, Università e Ricerca (MIUR, Italy); ‘Laboratorio di Bioinformatica per la Biodiversità Molecolare' (Progetto FAR, DM19410)’ Progetto Strategico Regione Puglia PS_012; AriSLA - Fondazione Italiana di Ricerca per la SLA

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