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Experimental design software tools | ChIP sequencing data analysis

ChIP-seq technology enables investigators to study genome-wide binding of transcription factors and mapping of epigenomic marks. Although the availability of basic analysis tools for ChIP-seq data is rapidly increasing, there has not been much…
G T A T C G C T A
SSA
Web
Desktop

SSA Submodular Selection of Assays

Chooses a diverse panel of genomic assays that leverages methods from…

Chooses a diverse panel of genomic assays that leverages methods from submodular optimization. SSA serves as a model for how submodular optimization can be applied to other discrete problems in…

G T A T C G C T A
CSSP
Desktop

CSSP ChIP-SEQ Statistical Power

A statistical framework for power calculations in ChIP-seq experiments by…

A statistical framework for power calculations in ChIP-seq experiments by considering a local Poisson model, which is commonly adopted by many peak callers. Evaluations with simulations and…

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