Explicet protocols

Explicet specifications

Information


Unique identifier OMICS_01497
Name Explicet
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for Explicet

Explicet IN pipelines

 (2)
2017
PMCID: 5373524
PMID: 28358811
DOI: 10.1371/journal.pone.0173848

[…] s2 figs). samples from patients with and without hypoxemia were distributed among the sequencing plates as shown in s1 table. otu tables with appropriate thresholds were imported into the program explicet [17] for normalization and subsequent diversity analyses and the wilcoxon rank-sum and two-proportions tests. rarefaction was performed on sample counts within explicet before bootstrapping […]

2017
PMCID: 5373524
PMID: 28358811
DOI: 10.1371/journal.pone.0173848

[…] imported into the program explicet [17] for normalization and subsequent diversity analyses and the wilcoxon rank-sum and two-proportions tests. rarefaction was performed on sample counts within explicet before bootstrapping to calculate chao1 diversity indices. the wilcoxon test is a non-parametric, continuity-corrected test appropriate for analysis of differential otu abundances [17]. […]

Explicet institution(s)
Department of Molecular, Cellular and Developmental Biology, University of Colorado, Boulder, CO, USA; University of Colorado Microbiome Research Consortium, Department of Pediatrics, University of Colorado Anschutz Medical Campus, Department of Biostatistics and Informatics, Colorado School of Public Health, Aurora, CO, USA; Incubix Incorporated, Boulder, CO, USA; Department of Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO, USA

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