eXpress specifications

Information


Unique identifier OMICS_01275
Name eXpress
Alternative name berkeley-express
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A multi-FASTA file of target sequences and a file, multiple files, or a piped stream of alignments.
Input format Multi-FASTA+SAM/BAM
Output data Target abundancies, parameter estimates and count variance-covariance.
Output format XPRS
Operating system Unix/Linux, Mac OS, Windows
Computer skills Advanced
Version 1.5.0
Stability Stable
Source code URL https://pachterlab.github.io/eXpress/downloads/express-1.5.1/express-1.5.1-src.tgz
Maintained No

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Publication for eXpress

eXpress institution(s)
Department of Computer Science, University of California, Berkeley, Berkeley, CA, USA

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