EASE

[…] with the delta threshold value of 7.48., in order to further investigate the biological functions of degs, reactome pathway enrichment analysis was conducted through david (27) by means of the expression analysis systematic explorer (ease) test (28). the ease score was applied to identify the significant categories. in the present study, the pathways with p<0.05 were considered […]

[…] database for annotation, visualization and integrated discovery (david; david.abcc.ncifcrf.gov) (13,14) were used to screen the pathways enriched for in the degs from the cancer samples using the expression analysis systematic explorer score (a modified fisher's exact t-test) with bh multiple testing correction (12). a kegg pathway with a bh-corrected p<0.05 was considered […]

[…] expressed genes; go, gene ontology; gsea, gene set enrichment analysis; pc, principal component; jnk, c-jun-n-terminal kinase; rma, robust multi-array average; fdr, false discovery rate; ease, expression analysis systematic explorer., the authors declare that they have no competing interests., ad analyzed the results, carried out bioinformatic analyses and wrote the paper; mjj carried […]

[…] entrez gene queries [25,26]. statistical data, fold change quantities, and go annotations were managed within an excel spreadsheet (microsoft, redmond, wa). expression patterns were analyzed using expression analysis systematic explorer (ease) standalone software [27]. microarray data were submitted to ncbi gene expression omnibus as the data series gse10303 for platform gpl6423 with sample […]