expVIP specifications

Information


Unique identifier OMICS_17788
Name expVIP
Alternative name expression Visualization and Integration Platform
Interface Web user interface
Restrictions to use None
Input data Takes an input of RNA-seq reads (from single or multiple studies), quantifies expression per gene using the fast pseudoaligner kallisto.
Output data Creates a database containing expression and sample information.
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Cristobal Uauy <>

Additional information


http://www.wheat-expression.com/

Information


Unique identifier OMICS_17788
Name expVIP
Alternative name expression Visualization and Integration Platform
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Ruby
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Cristobal Uauy <>

Additional information


http://www.wheat-expression.com/

Publication for expression Visualization and Integration Platform

expVIP institution(s)
John Innes Centre, Norwich, UK; Genome Analysis Centre, Norwich, UK
expVIP funding source(s)
This work was supported by the Biotechnology and Biological Sciences Research Council (grant nos. BB/J004588/1 and BB/ J003557/1 and Anniversary Future Leader fellowship no. BB/M014045/1) and by a Norwich Research Park Ph.D. studentship and a Genome Analysis Centre funding and maintenance grant.

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