extraBinomial specifications

Information


Unique identifier OMICS_10594
Name extraBinomial
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 2.1
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Chris Wallace <>

Publication for extraBinomial

extraBinomial in publications

 (3)
PMCID: 5215178
PMID: 28070283
DOI: 10.1002/ece3.2616

[…] following zuur, ieno, and elphick (), we used quasibinomial generalized linear models fit with the glm function in r to test the relationship for each species pair, in a manner that accounted for extrabinomial variation. we assessed the fit of all models using q–q and scale–location plots, which confirmed good fits. heteroscedasticity was apparent in most cases, but the effect […]

PMCID: 4430768
PMID: 26029258
DOI: 10.1111/eva.12253

[…] we used glim with a probit link and assumed binomial error distribution as recommended by mccullagh and nelder () in the statistical software r (r development core team, ). to account for extrabinomial variation (i.e. overdispersion expressed as the residual deviance being more than 1.5 greater than the degrees of freedom of the residual deviance), we used as model family […]

PMCID: 3607246
PMID: 23538326
DOI: 10.2193/2008-009

[…] in all rates (ϕtimeptimeγtime). we evaluated support for each model in the reverse-time, capture-recapture analysis using akaike's information criterion, as adjusted for small sample size and extrabinomial variation (qaicc), and the quasi-likelihood-adjusted akaike weights (wi) for each model in the candidate set., general goodness-of-fit tests for the pradel survival and seniority models […]


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extraBinomial institution(s)
Juvenile Diabetes Research Foundation/Wellcome Trust Diabetes and Inflammation Laboratory, Department of Medical Genetics, Cambridge Institute for Medical Research, University of Cambridge, Wellcome Trust/MRC Building, Addenbrooke’s Hospital, Cambridge, UK

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