Helps to identify environment descriptors, organisms, tissues and diseases mentioned in text and to annotate these using ontology/taxonomy terms. EXTRACT consists of a server that performs the Named Entity Recognition (NER) task, a bookmarklet that allows to submit text from a web page to the server and a popup that allows to inspect the identified terms and extract these annotations in tabular form.
Institute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research, Heraklion, Crete, Greece; Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Bremerhaven, Germany; Delaware Biotechnology Institute, Newark, DE, USA; Max Planck Institute for Marine Microbiology, Bremen, Germany; Jacobs University gGmbH, School of Engineering and Sciences, Bremen, Germany; Disease Systems Biology Program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark
EXTRACT funding source(s)
This project was supported by the LifeWatchGreece Research Infrastructure [38467694/GSRT/NSRF], the Micro B3 Project (287589), the Earth System Science and Environmental Management COST Action (ES1103), the Novo Nordisk Foundation (NNF14CC0001) and the Department of Energy (DE-SC0010838).