Main logo
?
tutorial arrow
×
Create your own tool library
Bookmark tools and put favorites into folders to find them easily.

EXTREME

A motif discovery algorithm designed to find DNA-binding motifs in ChIP-Seq and DNase-Seq data.

User report

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community
Sort by:

1 user review

1 user review

Ka-Chun Wong's avatar image

Ka-Chun Wong

The software is designed to be fast for motif discovery on large sequence datasets. The methodology is ingenious and well-justified from computational complexity view. I highly recommend people to try the software, although its software usability still needs improvement. Knowledge in command-line and installation is required.

EXTREME forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

EXTREME classification

EXTREME specifications

Software type:
Package/Module
Restrictions to use:
None
Programming languages:
Java, Perl, Python
Stability:
Stable
Interface:
Command line interface
Operating system:
Unix/Linux
Computer skills:
Advanced
Maintained:
Yes

EXTREME distribution

versioning

tutorial arrow
×
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free to upload your code and get a DOI

No versioning.

EXTREME support

Documentation

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free to badge your contributorship

Publications

Institution(s)

Department of Computer Science, University of California, Irvine, CA, USA; Center for Complex Biological Systems, University of California, Irvine, CA, USA

Link to literature

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.