EXTREME specifications

Information


Unique identifier OMICS_03428
Name EXTREME
Software type Package/Module
Interface Command line interface
Restrictions to use None
Output format PNG,EPS,MEME
Operating system Unix/Linux
Programming languages C, C++, Objective-C, Perl, Python
License GNU General Public License version 2.0
Computer skills Advanced
Version 2.0.0
Stability Stable
Requirements Numpy, Java
Maintained Yes

Versioning


Add your version

Maintainers


  • person_outline Xiaohui Xie <>
  • person_outline Daniel Quang <>

EXTREME articles

EXTREME institution(s)
Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA; Department of Human Genetics, University of Michigan, Ann Arbor, MI, USA
EXTREME funding source(s)
Supported by the National Heart, Lung, and Blood Institute [U01HL137182].

EXTREME review

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Ka-Chun Wong

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Desktop
The software is designed to be fast for motif discovery on large sequence datasets. The methodology is ingenious and well-justified from computational complexity view. I highly recommend people to try the software, although its software usability still needs improvement. Knowledge in command-line and installation is required.