ExUTR statistics

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Citations per year

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Popular tool citations

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Tool usage distribution map

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Associated diseases

Associated diseases

ExUTR specifications


Unique identifier OMICS_23729
Name ExUTR
Software type Application/Script
Interface Command line interface
Restrictions to use None
Output data Some annotated transcripts with potential ORF and unambiguous stop codon, and their corresponding amino acid sequences.
Output format FASTA+CSV
Operating system Unix/Linux
Programming languages Perl, Shell (Bash)
License GNU General Public License version 2.0
Computer skills Advanced
Version 0.1.0
Stability Stable
Bioperl, ncbi-blast, swissprot
Maintained Yes



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  • person_outline Zixia Huang <>

Publication for ExUTR

ExUTR in publication

PMCID: 2749860
PMID: 19703276
DOI: 10.1186/1471-2180-9-176

[…] []., this module has genes involved in hexuronate metabolism [], organized into two independent operons. both operons are known to be negatively regulated by ccpa, whereas the uxac-yjmbcd-uxua-yjmf-exutr-uxaba operon is additionally, negatively regulated by exur []. the microarray data indicated that the genes were repressed, suggesting that ccpa represses them, when glucose is present., […]

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ExUTR institution(s)
UCD School of Biology and Environmental Science, University College Dublin, Belfield, Dublin, Ireland
ExUTR funding source(s)
Supported by a European Research Council Research Grant ERC-2012-StG311000 and a China Scholarship Council studentship (under UCD-CSC funding programme).

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