ExUTR specifications

Information


Unique identifier OMICS_23729
Name ExUTR
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input format FASTQ,FASTA,BLAST
Output data Some annotated transcripts with potential ORF and unambiguous stop codon, and their corresponding amino acid sequences.
Output format FASTA+CSV
Operating system Unix/Linux
Programming languages Perl, Shell (Bash)
License GNU General Public License version 2.0
Computer skills Advanced
Version 0.1.0
Stability Stable
Requirements
Bioperl, ncbi-blast, swissprot
Maintained Yes

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Maintainer


  • person_outline Zixia Huang <>

Publication for ExUTR

ExUTR institution(s)
UCD School of Biology and Environmental Science, University College Dublin, Belfield, Dublin, Ireland
ExUTR funding source(s)
Supported by a European Research Council Research Grant ERC-2012-StG311000 and a China Scholarship Council studentship (under UCD-CSC funding programme).

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