ExUTR statistics

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Citations per year

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Popular tool citations

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Tool usage distribution map

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Associated diseases

Associated diseases

ExUTR specifications

Information


Unique identifier OMICS_23729
Name ExUTR
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input format FASTQ,FASTA,BLAST
Output data Some annotated transcripts with potential ORF and unambiguous stop codon, and their corresponding amino acid sequences.
Output format FASTA+CSV
Operating system Unix/Linux
Programming languages Perl, Shell (Bash)
License GNU General Public License version 2.0
Computer skills Advanced
Version 0.1.0
Stability Stable
Requirements
Bioperl, ncbi-blast, swissprot
Maintained Yes

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Maintainer


  • person_outline Zixia Huang <>

Publication for ExUTR

ExUTR in publication

PMCID: 2749860
PMID: 19703276
DOI: 10.1186/1471-2180-9-176

[…] []., this module has genes involved in hexuronate metabolism [], organized into two independent operons. both operons are known to be negatively regulated by ccpa, whereas the uxac-yjmbcd-uxua-yjmf-exutr-uxaba operon is additionally, negatively regulated by exur []. the microarray data indicated that the genes were repressed, suggesting that ccpa represses them, when glucose is present., […]


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ExUTR institution(s)
UCD School of Biology and Environmental Science, University College Dublin, Belfield, Dublin, Ireland
ExUTR funding source(s)
Supported by a European Research Council Research Grant ERC-2012-StG311000 and a China Scholarship Council studentship (under UCD-CSC funding programme).

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