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EzyPred specifications

Information


Unique identifier OMICS_18475
Name EzyPred
Interface Web user interface
Restrictions to use None
Input data A protein sequence.
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Shen H.B. <>

Publication for EzyPred

EzyPred in publications

 (5)
PMCID: 5521120
PMID: 28732462
DOI: 10.1186/s12859-017-1758-x

[…] 3d–structure-based classifier ranked first among several other svm-based methods assessed in this dataset. furthermore, the model leveraging 1d descriptors, showed a higher success rate than ezypred on a benchmark annotation dataset from the shewanella oneidensis proteome., the applicability of protdcal as a general-purpose-af protein modelling method is illustrated […]

PMCID: 4831692
PMID: 27078147
DOI: 10.1371/journal.pone.0153503

[…] with am-pse-aac feature extraction method, which was first developed by kou-chen chou for enzyme subfamily class prediction, and attained an excellent accuracy of 92.1% for the six main families. ezypred[] is a three-layer predictor that is based on pssm; it considers protein evolutionary information abundant in the profiles. the second layer responsible for predicting the main function class […]

PMCID: 4474468
PMID: 26099921
DOI: 10.1186/1471-2164-16-S7-S16

[…] in predicting the finer levels in the hierarchy, thus offer only limited value to enzyme annotations. many enzyme prediction methods exhibit a lack of balance between specificity and sensitivity; ezypred [] and eficaz2.5 [] offer limited sensitivity for certain enzyme classes and/or ec levels and run extremely slow with high false positive rates. hence, the existing methods are inadequate […]

PMCID: 3073942
PMID: 21494599
DOI: 10.1371/journal.pone.0018414

[…] was performed by the molecular operating environment (moe), and the alignment result thus obtained indicates that the two proteins have a sequence identity of 43%., meanwhile, using the web-server ezypred at http://www.csbio.sjtu.edu.cn/bioinf/ezypred/ and the protein sequence information, it was identified that ndm-1 is a member of hydrolases enzyme family (acting on carbon-nitrogen bonds […]

PMCID: 2358896
PMID: 18416838
DOI: 10.1186/1471-2105-9-201

[…] alignment in the form of pssm has been used for predicting secretory proteins. recently number of study used pssm profile composition for developing prediction methods; for example memtype-2l, ezypred, tbpred, dnabinder, srtpred used for predicting membrane, enzyme class, subcellular localization of m. tuberculosis, dna binding and secretory proteins respectively [-]. the pssm […]


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EzyPred institution(s)
Gordon Life Science Institute, San Diego, CA, USA; Institute of Image Processing & Pattern Recognition, Shanghai Jiaotong University, Shanghai, China

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