Similar protocols

Pipeline publication

[…] lysis pipelines will eliminate the use of array based studies. Thus we anticipate for each sorted population isolated from clinical samples of interest that a unified analysis of individual genomes, including somatic mutations, structural variations, and copy number aberrations will be derived from a single experiment. We believe that these analyses will provide an even deeper study of the clonal landscape of each tumor that can be advanced for improved patient care., The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., 1 http://www.bioinformatics.babraham.ac.uk/projects/fastqc/ , 2 http://www.illumina.com/support/sequencing/sequencing_software/casava.ilmn , 3 http://picard.sourceforge.net ] […]

Pipeline specifications

Software tools FastQC, BCL2FASTQ Conversion Software, Picard
Organisms Homo sapiens
Diseases Disease, Leukemia, Lymphoproliferative Disorders, Neoplasms, Urogenital Neoplasms, Genital Neoplasms, Male, Prostatic Diseases