Dataset features

Specifications


Application: ChIP-seq analysis
Number of samples: 17
Release date: Jul 31 2014
Last update date: Oct 18 2018
Access: Public
Taxon: Homo sapiens, Mus musculus
Dataset link Nucleosome occupancy changes in mammalian cell differentiation and reprogramming (Mnase-Seq)

Experimental Protocol


Micrococcal nuclease digestion of chromatin in crosslinked cells was followed by high throughput sequencing. These experiments were carried out in four mouse cell types: embryonic stem cells, induced pluripotent stem cells, somatic tail-tip fibroblasts and liver, and three human cell types: H1-OGN embryonic stem cells, H1-OGN induced pluripotent stem cells, and fibroblasts differentiated from H1-OGN ESCs. At least two replicates performed with each cell type were sequenced.

Repositories


GEO

GSE59062

ArrayExpress

E-GEOD-59062

ENA

SRP044041

BioProject

PRJNA254322

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