Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 8
Release date: Apr 12 2017
Last update date: Nov 28 2018
Access: Public
Diseases: Coronary Artery Disease, Coronary Disease, Parkinson Disease, Secondary, Polyradiculoneuropathy, Chronic Inflammatory Demyelinating
Chemicals: Calcium
Genes: TCF21, AHR, HNF4A, ARNT, CYP1A1, C5orf3
Computational protocol: GATK, cutadapt, BWA, Picard, STAR, RASQUAL, HaploReg
Dataset link TCF21 and Aryl-hydrocarbon receptor gene cooperate to activate a pro-atherosclerotic gene expression program

Experimental Protocol


[RNA-Seq] HCASMC: TCF21 overexpression and control. The ChIP-Seq data are submitted under GSE61369 and the ATAC-Seq data are submitted under GSE72696.

Repositories


GEO

GSE85565

ENA

SRP081577

BioProject

PRJNA338802

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Contact


Thomas Quertermous

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