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F2Dock specifications

Information


Unique identifier OMICS_03786
Name F2Dock
Alternative name Fast Fourier Protein-Protein Docking
Software type Package/Module
Interface Command line interface, Graphical user interface
Restrictions to use None
Input data Receptor and ligand files
Input format PDB
Output data Individual conformations, breakdown of scores of different terms, statistics, smooth/UofB rendering of the complex, overlayed rendering of multiple conformations
Operating system Unix/Linux, Mac OS
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for Fast Fourier Protein-Protein Docking

F2Dock in publications

 (2)
PMCID: 4749890
PMID: 26937457
DOI: 10.1016/j.dib.2016.01.001

[…] files and in the plots under the plots folder. the models can be found in the optimizedmodels folder., the binding site analysis was performed by docking cd4 and 17b with the optimized models using f2dock . f2dock reports the top 1000 possible binding poses. we define the parts of the surface of gp120 that is in contact with the cdr loops of cd4 and 17b in a docking pose as the footprint/site […]

PMCID: 3590208
PMID: 23483883
DOI: 10.1371/journal.pone.0051307

[…] the user to manage multiple docking jobs, and visualize the docked poses and interfaces. both the server and client are available for download. server: http://www.cs.utexas.edu/~bajaj/cvc/software/f2dock.shtml. client: http://www.cs.utexas.edu/~bajaj/cvc/software/f2dockclient.shtml., the study of protein-protein interactions plays an important role in understanding the processes of life . […]


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F2Dock institution(s)
Computational Visualization Center, Department of Computer Sciences and The Institute of Computational Engineering and Sciences, The University of Texas, Austin, TX, USA; Google Inc; Mountain View, CA, USA
F2Dock funding source(s)
This work was supported in part by NSF grants IIS-0325550, CNS-0540033 and grants from the NIH R01 GM074258, R01-GM073087, R01-EB004873.

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