Computational protocol: Human PAPS Synthase Isoforms Are Dynamically Regulated Enzymes with Access to Nucleus and Cytoplasm

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Protocol publication

[…] Structural investigation of existing PDB files was performed using YASARA . Secondary structure predictions were done using NPS . Surface exposure of particular amino acids was analysed using the DSSP tool as described . Sequences were aligned using ClustalW . The mouse EST collection at GenBank was searched for using BLAST . Genomic DNA sequence for the murine PAPSS2 locus ENSMUSG00000024899 was retrieved from Ensembl and searched for using the bl2seq option of BLAST . […]

Pipeline specifications

Software tools YASARA, Clustal W
Application Drug design
Organisms Homo sapiens
Diseases Infection, Genetic Diseases, Inborn