Dataset features

Specifications


Application: Gene expression microarray analysis
Number of samples: 178
Release date: Sep 6 2008
Last update date: Mar 20 2012
Access: Public
Dataset link Gene expression and intragenic polymorphism in a Populus trichocarpa and Populus deltoides pseudo-backcross pedigree

Experimental Protocol


Data include one biological replicate of 178 segregating pseudobackcross progeny analyzed for gene expression (GE) using one probe per gene for 55793 independent gene models (probes E_POPLARSxxxxxPxxxxx) and single feature sequence polymorphism (SFP) using one probe per gene for 12084 independent gene models (probes G_POPLARSxxxxxPxxxxx). GE and SFP probes were selected from 6-7 probes per gene previously tested in a pilot study of the two parent trees of the cross (Populus deltoides X Populus trichocarpa).

Repositories


GEO

GSE12623

ArrayExpress

E-GEOD-12623

BioProject

PRJNA113089

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Contact


Matias Kirst