Computational protocol: The genome sequence of Xanthomonas oryzae pathovar oryzae KACC10331, the bacterial blight pathogen of rice

Similar protocols

Protocol publication

[…] ORFs were identified using Glimmer 2.0 () () or GeneMark () (). In a few cases, open reading frames (ORFs) were identified by similarities detected using BLAST. Annotation was completed using BLAST and tRNAscan-SE () in reflection of the functional categories for clusters of orthologous groups (COGs). Annotation of transporter proteins was assisted from the KEGG databases () (). […]

Pipeline specifications

Software tools Glimmer, GeneMark, tRNAscan-SE
Databases KEGG
Application Genome annotation
Organisms Xanthomonas citri, Xanthomonas campestris pv. campestris, Xanthomonas oryzae, Oryza sativa
Diseases Bacterial Infections