Dataset features

Specifications


Dataset type: Genome variation profiling by SNP array, SNP genotyping by SNP array, Variation
Number of samples: 47
Release date: Aug 16 2016
Last update date: Nov 27 2018
Access: Public
Computational protocol: UCSC LiftOver, liftoveR, ADMIXTURE
Dataset link A Genome-Wide Search for Greek and Jewish Admixture in the Kashmiri Population

Experimental Protocol


DNA was collected from 15 Kashmiri individuals from the Kashmir Valley who provided written consent. The families of these individuals have resided in the Kashmir Valley for at least three generations and have no history of marriages outside of the valley or to a non-Kashmiri. Sixteen Kashmiri Tibetans from Srinagar, India, who have Tibetan ancestry and now practice Islam, were also genotyped. We performed further genotyping on a previously undescribed population of 32 first- and second-generation Tibetan exiles in McLeod Ganj, which included two individuals from the Tibetan Children’s Village, to serve as population references. These individuals were then genotyped for single nucleotide polymorphisms (SNPs) using the Affymetrix Genome-Wide Human SNP Array 6.0.

Repositories


GEO

GSE85594

BioProject

PRJNA338914

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Contact


Lynn Jorde

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