Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 6
Release date: Aug 14 2018
Last update date: Aug 14 2018
Access: Public
Chemicals: Carbon
Dataset link Differential RNA-Seq (dRNA-seq) data from Sphingopyxis granuli strain TFA grown in two different carbon sources and RNA-seq from Hfq-coIP experiment.

Experimental Protocol


Comparison of gene expression and TSS detection in TFA cells growing exponentially on minimal medium plus β-hydroxybutyrate and minimal medium plus tetralin. Identification of Hfq-binding RNAs through a co-immunoprecipitation experiment.

Repositories


GEO

GSE111181

ENA

SRP133569

BioProject

PRJNA436122

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Contact


Konrad Förstner