Dataset features

Specifications


Application: Gene expression microarray analysis
Number of samples: 18
Release date: Jun 14 2013
Last update date: Aug 14 2013
Access: Public
Taxon: Histoplasma capsulatum, Saccharomyces cerevisiae, Homo sapiens
Dataset link A temperature-responsive network links cell shape and virulence traits in a primary fungal pathogen -- T-DNA mutants (2)

Experimental Protocol


cDNA from each ryp mutants and wild-type controls was labeled with Cy5 and competitively hybridized against the Cy3-labeled pooled reference sample using H. capsulatum whole-genome 70-mer oligonucleotide microarray. For the experiments with ryp T-DNA mutants, there were 4 to 6 replicates for each strain and condition, and for the experiments with ryp knockdown strains, there were 3 to 12 replicates for each strain and condition. The T-DNA and knockdown experiments are being submitted as separate series, with samples further divided based on G217B platform version.

Repositories


GEO

GSE46937

ArrayExpress

E-GEOD-46937

BioProject

PRJNA208218

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Contact


Mark Voorhies

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