Dataset features

Specifications


Dataset type: Other
Number of samples: 8
Release date: May 2 2017
Last update date: Jan 24 2018
Access: Public
Diseases: Cluster Headache
Chemicals: Nitrites
Dataset link Denitrifying bacterial assemblages respond to environmental conditions of a shallow estuary

Experimental Protocol


Two color array (Cy3 and Cy5): 90-mer oligonucleotide probe consisting of 70-mer archetype sequence and a 20-mer reference oligo is printed to the slide. Cy3 fluoresced environmental DNA sequences, within 15% of the 70-mer archetype, and the 20-mer, Cy5 fluoresced complementary reference oligo will bind to the oligo probes on the array. Signal is the ratio of Cy3 to Cy5. Two replicate arrays were run on duplicate targets.

Repositories


GEO

GSE98190

BioProject

PRJNA384981

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Contact


Jessica Lisa