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FABA specifications


Unique identifier OMICS_22315
Alternative name Four-dimensional Ascidian Body Atlas
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Version 2008.9.9
Maintained No


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Publication for Four-dimensional Ascidian Body Atlas

FABA citations


Satellite DNA in Vicia faba is characterized by remarkable diversity in its sequence composition, association with centromeres, and replication timing

Sci Rep
PMCID: 5895790
PMID: 29643436
DOI: 10.1038/s41598-018-24196-3

[…] Putative satellite repeats were identified in the course of our previous study via graph-based clustering of V. faba genomic shotgun reads using the RepeatExplorer pipeline. Reconstruction of monomer sequences of selected satellites was performed using TAREAN. Reconstructed sequences were used to design oligonu […]


How much is too much?—Influence of X ray dose on root growth of faba bean (Vicia faba) and barley (Hordeum vulgare)

PLoS One
PMCID: 5868774
PMID: 29579093
DOI: 10.1371/journal.pone.0193669

[…] Root growth development and the influence of cumulated X-ray dose on Vicia faba and Hordeum vulgareX-ray CT enables studies of root growth development in a very high quality. The chosen scanning interval revealed essential steps of root system development of Vicia faba (, – […]


Analysis of aluminum toxicity in Hordeum vulgare roots with an emphasis on DNA integrity and cell cycle

PLoS One
PMCID: 5821363
PMID: 29466444
DOI: 10.1371/journal.pone.0193156

[…] ffects of Al3+ ions on DNA integrity, which are observed as micronuclei, have been demonstrated in many species. Min et al. [] reported a significant increase in the frequency of micronuclei in Vicia faba root tip cells after Al treatment in the range 0.01–10 mM. Chromosome aberrations induced by Al have also been reported in wheat [] and rice []. Our results demonstrate that Al is a weak clastoge […]


Drought stress impact on leaf proteome variations of faba bean (Vicia faba L.) in the Qinghai–Tibet Plateau of China

3 Biotech
PMCID: 5797714
PMID: 29430371
DOI: 10.1007/s13205-018-1088-3

[…] ty or extensive homology (p < 0.05) were considered successful. Functional categories were been assigned according to biological process, based on the SWISS-PROT/TrEMBL and UniProt protein databases. Faba bean is a non-model plant, so we mapped it to a model plant, Arabidopsis thaliana, for subsequent bioinformatics analysis. Firstly, gene ontology (GO) annotation defined each different protein by […]


Assessment of DNA Contamination in RNA Samples Based on Ribosomal DNA

PMCID: 5908672
PMID: 29443017
DOI: 10.3791/55451

[…] formation in different Poaceae species including Triticum aestivum, Hordeum vulgare, Oryza sativa, and in the dicots Medicago sativa, Cucumis sativus, Nicotiana tabacum, Trifolium alexandrinum, Vicia faba, and Arabidopsis thaliana. The further test of the amplification products by electrophoretic size separation showed a unique band. As expected, the bands derived from samples of different species […]


Genome wide identification of wheat and Brachypodium type one protein phosphatases and functional characterization of durum wheat TdPP1a

PLoS One
PMCID: 5770040
PMID: 29338035
DOI: 10.1371/journal.pone.0191272

[…] ePlant/BAR) but the nine Arabidopsis TOPPs have similar expression patterns independently of plant growth conditions, hormonal treatments and plant tissue (data from ePlant/BAR). In the case of Vicia faba, VfPP1c-1 seems to be specifically expressed in guard cells while VfPP1c-2, 3, 4 are not expressed there. Yet, VfPP1c-1 promotes stomata opening upon blue light signaling []. The expression lands […]


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FABA institution(s)
Department of Bioscience and Informatics, Faculty of Science and Technology, Keio University, Yokohama, Japan; Center for Information Biology, National Institute of Genetics, Shizuoka, Japan; Department of Morphogenesis, National Institute for Basic Biology, Aichi, Japan; Shimoda Marine Reearch Center, Graduate School of Life and Environmental Science, University of Tsukuba, Shizuoka, Japan
FABA funding source(s)
Supported by JSPS (18770207) and by a grant-in-aid from MEXT.

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