FABSIM statistics

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Citations per year

Citations chart

Popular tool citations

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Tool usage distribution map

Tool usage distribution map

Associated diseases

Associated diseases

FABSIM specifications


Unique identifier OMICS_25433
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format ms,cosi,SelSim
Output data Information per sample and tabulated data.
Operating system Unix/Linux, Windows
Programming languages Java
Computer skills Advanced
Stability Stable
Java Runtime Environment
Maintained Yes



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  • person_outline Francesc Calafell <>

Publication for FABSIM

FABSIM in publications

PMCID: 4368376
PMID: 25488829
DOI: 10.1002/adma.201403361

[…] requirements; ii) to sustain the workflow in cases when one or more resources are undergoing maintenance or become heavily oversubscribed., the fabmd toolkit, and its general-purpose equivalent fabsim (http://www.github.com/djgroen/fabsim) were originally derived from a python package named fabric,[] itself developed to aid in the administration of computer systems. the automation offered […]

PMCID: 3351476
PMID: 22606277
DOI: 10.1371/journal.pone.0036642

[…] for their cycle length (see ) were not included in analyses conducted on early and late accessions separately. polymorphism and molecular evolution analyses were performed using dnasp v5.00 and fabsim software ., in order to infer the allelic phase of the sts sequences obtained from direct sequencing of pcr products, the algorithms phase v2.1 , implemented in dnasp was used. one […]

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FABSIM institution(s)
IBE, Institute of Evolutionary Biology (UPF-CSIC), CEXS-UPF-PRBB. Barcelona, Spain; CIBER en Epidemiologia y Salud Pública (CIBEREsp), Barcelona, Spain

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