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FABSIM specifications


Unique identifier OMICS_25433
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format ms,cosi,SelSim
Output data Information per sample and tabulated data.
Operating system Unix/Linux, Windows
Programming languages Java
Computer skills Advanced
Stability Stable
Java Runtime Environment
Maintained Yes




No version available



  • person_outline Francesc Calafell

Publication for FABSIM

FABSIM citations


Rapid and Reliable Binding Affinity Prediction of Bromodomain Inhibitors: A Computational Study

J Chem Theory Comput
PMCID: 5312866
PMID: 28005370
DOI: 10.1021/acs.jctc.6b00794

[…] apid, accurate, precise, and reproducible binding affinity calculations based on the use of a Binding Affinity Calculator (BAC) software tool and associated services including a Python-based toolkit, FabSim, to automate data transfer and job submission. The approach is based on the use of high performance computing in an automated workflow which builds models, runs large numbers of replica calcula […]


Chemically Specific Multiscale Modeling of Clay–Polymer Nanocomposites Reveals Intercalation Dynamics, Tactoid Self Assembly and Emergent Materials Properties

PMCID: 4368376
PMID: 25488829
DOI: 10.1002/adma.201403361

[…] storage requirements; ii) to sustain the workflow in cases when one or more resources are undergoing maintenance or become heavily oversubscribed.The FabMD toolkit, and its general-purpose equivalent FabSim (http://www.github.com/djgroen/FabSim) were originally derived from a Python package named Fabric,[] itself developed to aid in the administration of computer systems. The automation offered in […]


Evolution of Neutral and Flowering Genes along Pearl Millet (Pennisetum glaucum) Domestication

PLoS One
PMCID: 3351476
PMID: 22606277
DOI: 10.1371/journal.pone.0036642
call_split See protocol

[…] ined for their cycle length (see ) were not included in analyses conducted on early and late accessions separately. Polymorphism and molecular evolution analyses were performed using DnaSP v5.00 and Fabsim software . […]


Cereal Domestication and Evolution of Branching: Evidence for Soft Selection in the Tb1 Orthologue of Pearl Millet (Pennisetum glaucum [L.] R. Br.)

PLoS One
PMCID: 3142148
PMID: 21799845
DOI: 10.1371/journal.pone.0022404

[…] d molecular evolution analyses were performed using DnaSP and the MS program to simulate demographic models by coalescence methods. Statistics were computed from the outputs of the MS program using FABSIM . […]


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FABSIM institution(s)
IBE, Institute of Evolutionary Biology (UPF-CSIC), CEXS-UPF-PRBB. Barcelona, Spain; CIBER en Epidemiologia y Salud Pública (CIBEREsp), Barcelona, Spain

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