FACADE statistics

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Citations per year

Number of citations per year for the bioinformatics software tool FACADE
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FACADE specifications

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Unique identifier OMICS_10379
Name FACADE
Alternative name Fast Algorithm for Calling After Detection of Edges
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input data FACADE takes as its primary input, a matrix of log2 ratios (log2 ratios represent a comparison of normalized signal intensities from hybridization of labeled sample and reference genomes) for array elements spanning the genome.
Operating system Unix/Linux
Programming languages Java
Computer skills Advanced
Stability No
Maintained No

Versioning


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Publication for Fast Algorithm for Calling After Detection of Edges

FACADE citation

library_books

Lung Adenocarcinoma of Never Smokers and Smokers Harbor Differential Regions of Genetic Alteration and Exhibit Different Levels of Genomic Instability

2012
PLoS One
PMCID: 3296775
PMID: 22412972
DOI: 10.1371/journal.pone.0033003

[…] as obtained from http://cbio.mskcc.org/Public/lung_array_data/ . The MSKCC dataset was comprised of 25 current smokers and 41 NS. Copy number profiles were generated using the segmentation algorithm, FACADE with default parameters and a baseline distribution of 10 kbp . EGFR and KRAS mutation data were also available for these tumors from the same source. Affymetrix SNP 250 K array data generated […]


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FACADE institution(s)
Department of Integrative Oncology, British Columbia Cancer Research Centre, Vancouver, BC, Canada
FACADE funding source(s)
Canadian Institutes of Health Research; Canadian Cancer Society; Canary Foundation; National Institute of Health/National Cancer Institute Early Detection Research Network; and scholarships from the Canadian Institutes of Health Research; and Michael Smith Foundation for Health Research

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