FACADE statistics

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FACADE specifications


Unique identifier OMICS_10379
Alternative name Fast Algorithm for Calling After Detection of Edges
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input data FACADE takes as its primary input, a matrix of log2 ratios (log2 ratios represent a comparison of normalized signal intensities from hybridization of labeled sample and reference genomes) for array elements spanning the genome.
Operating system Unix/Linux
Programming languages Java
Computer skills Advanced
Stability No
Maintained No


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Publication for Fast Algorithm for Calling After Detection of Edges

FACADE in publication

PMCID: 3296775
PMID: 22412972
DOI: 10.1371/journal.pone.0033003

[…] obtained from http://cbio.mskcc.org/public/lung_array_data/ . the mskcc dataset was comprised of 25 current smokers and 41 ns. copy number profiles were generated using the segmentation algorithm, facade with default parameters and a baseline distribution of 10 kbp . egfr and kras mutation data were also available for these tumors from the same source. affymetrix snp 250 k array data generated […]

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FACADE institution(s)
Department of Integrative Oncology, British Columbia Cancer Research Centre, Vancouver, BC, Canada
FACADE funding source(s)
Canadian Institutes of Health Research; Canadian Cancer Society; Canary Foundation; National Institute of Health/National Cancer Institute Early Detection Research Network; and scholarships from the Canadian Institutes of Health Research; and Michael Smith Foundation for Health Research

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