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Citations per year

Number of citations per year for the bioinformatics software tool FACADE

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FACADE specifications


Unique identifier OMICS_10379
Alternative name Fast Algorithm for Calling After Detection of Edges
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input data FACADE takes as its primary input, a matrix of log2 ratios (log2 ratios represent a comparison of normalized signal intensities from hybridization of labeled sample and reference genomes) for array elements spanning the genome.
Operating system Unix/Linux
Programming languages Java
Computer skills Advanced
Stability No
Maintained No


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Publication for Fast Algorithm for Calling After Detection of Edges

FACADE citation


Lung Adenocarcinoma of Never Smokers and Smokers Harbor Differential Regions of Genetic Alteration and Exhibit Different Levels of Genomic Instability

PLoS One
PMCID: 3296775
PMID: 22412972
DOI: 10.1371/journal.pone.0033003

[…] as obtained from http://cbio.mskcc.org/Public/lung_array_data/ . The MSKCC dataset was comprised of 25 current smokers and 41 NS. Copy number profiles were generated using the segmentation algorithm, FACADE with default parameters and a baseline distribution of 10 kbp . EGFR and KRAS mutation data were also available for these tumors from the same source. Affymetrix SNP 250 K array data generated […]

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FACADE institution(s)
Department of Integrative Oncology, British Columbia Cancer Research Centre, Vancouver, BC, Canada
FACADE funding source(s)
Canadian Institutes of Health Research; Canadian Cancer Society; Canary Foundation; National Institute of Health/National Cancer Institute Early Detection Research Network; and scholarships from the Canadian Institutes of Health Research; and Michael Smith Foundation for Health Research

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