FactoMineR statistics

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FactoMineR specifications

Information


Unique identifier OMICS_15900
Name FactoMineR
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Medium
Version 1.34
Stability Stable
Source code URL https://www.jstatsoft.org/index.php/jss/article/downloadSuppFile/v025i01/FactoMineR_1.08.tar.
Maintained Yes

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Publication for FactoMineR

FactoMineR in publications

 (376)
PMCID: 5958058
PMID: 29773832
DOI: 10.1038/s41467-018-04383-6

[…] not the main representative state per region. sex chromosomes were removed for the rest of the analysis. an mca analysis was performed on the filtered chromatin states matrix (665,328 regions) using factominer. as in pca, the mca decomposes the variance into a component of a set of new orthogonal variables (dimensions) ordered by the amount of variance that each component explains. for a given […]

PMCID: 5943461
PMID: 29743727
DOI: 10.1038/s41598-018-25760-7

[…] unifrac was calculated by qiime software. cluster analysis was preceded by principal coordinate analysis (pcoa), which was applied to reduce the dimension of the original variables using the factominer package and ggplot2 package in r software (version 3.2.2)., weighted gene co-expression network analysis (wgcna) was used to generate a co-occurrence network based on the otu […]

PMCID: 5943202
PMID: 29744605
DOI: 10.1186/s13568-018-0603-6

[…] chao1, shannon, simpson, ace, and good-coverage, were applied in analysing the complexity of species diversity for each sample. principal component analysis (pca) was preceded by the factominer package and ggplot2 package in r software (version 2.15.3)., the sediments were freeze-dried (christ alpha 1-4ld, germany) before the oil analysis and 20 g of sediment samples […]

PMCID: 5938307
PMID: 29736594
DOI: 10.1007/s11095-018-2424-3

[…] to a random distribution: v-test value greater than 1.96 (p-value<0.05). the higher the v-test value, the more strongly the category was over-represented in the cluster., the r packages “factominer” () and “missmda” () were used to perform multivariate analysis and to handle missing data, respectively., to validate the statistical reliability of the acceptability reference framework […]

PMCID: 5922543
PMID: 29702662
DOI: 10.1371/journal.pone.0196461

[…] viability a chi-squared proportion test was used. lipidome composition (lipid concentration expressed as pmol/mg of fresh tissue) was visualized with a principal component analysis (pca) using the factominer package and the difference between groups was assessed with an anova on the principal component scores, followed by a post-hoc tuckey test., after 21 days of exposure, the adult female […]


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FactoMineR institution(s)
Agrocampus Rennes, UMR CNRS 6625, Rennes, France

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