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FactoMineR specifications

Information


Unique identifier OMICS_15900
Name FactoMineR
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Medium
Version 1.34
Stability Stable
Source code URL https://www.jstatsoft.org/index.php/jss/article/downloadSuppFile/v025i01/FactoMineR_1.08.tar.
Maintained Yes

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Publication for FactoMineR

FactoMineR citations

 (466)
library_books

Distinct epigenetic landscapes underlie the pathobiology of pancreatic cancer subtypes

2018
Nat Commun
PMCID: 5958058
PMID: 29773832
DOI: 10.1038/s41467-018-04383-6

[…] not the main representative state per region. Sex chromosomes were removed for the rest of the analysis. An MCA analysis was performed on the filtered chromatin states matrix (665,328 regions) using FactoMineR. As in PCA, the MCA decomposes the variance into a component of a set of new orthogonal variables (dimensions) ordered by the amount of variance that each component explains. For a given di […]

library_books

Different rearing conditions alter gut microbiota composition and host physiology in Shaoxing ducks

2018
Sci Rep
PMCID: 5943461
PMID: 29743727
DOI: 10.1038/s41598-018-25760-7

[…] weighted UniFrac was calculated by QIIME software. Cluster analysis was preceded by principal Coordinate analysis (PCoA), which was applied to reduce the dimension of the original variables using the FactoMineR package and ggplot2 package in R software (Version 3.2.2). […]

library_books

Dimensionality of the Pittsburgh Sleep Quality Index: a systematic review

2018
PMCID: 5944037
PMID: 29743066
DOI: 10.1186/s12955-018-0915-x

[…] rent software programs were used for CFA: 6 studies used Mplus [, , –, ], 12 used SPSS with Amos [–, , , , , , , , , ], 4 used STATA [, , , ] and 2 each used LISREL [, ], and SAS [45 []], 1 each used FactoMineR [], EQS [], and SEM []. Five studies did not report which software program was used [, , , , ]. Thirteen studies did not report the method of extraction [, , , , , , –, , ]. Nine studies us […]

call_split

Microbial diversity and ecotoxicity of sediments 3 years after the Jiaozhou Bay oil spill

2018
PMCID: 5943202
PMID: 29744605
DOI: 10.1186/s13568-018-0603-6
call_split See protocol

[…] bserved-species, Chao1, Shannon, Simpson, ACE, and good-coverage, were applied in analysing the complexity of species diversity for each sample. Principal component analysis (PCA) was preceded by the FactoMineR package and ggplot2 package in R software (Version 2.15.3). […]

library_books

A Decision Support Tool Facilitating Medicine Design for Optimal Acceptability in The Older Population

2018
Pharm Res
PMCID: 5938307
PMID: 29736594
DOI: 10.1007/s11095-018-2424-3

[…] in comparison to a random distribution: v-test value greater than 1.96 (p-value<0.05). The higher the v-test value, the more strongly the category was over-represented in the cluster.The R packages “FactoMineR” () and “MissMDA” () were used to perform multivariate analysis and to handle missing data, respectively. […]

library_books

Fenoxycarb exposure disrupted the reproductive success of the amphipod Gammarus fossarum with limited effects on the lipid profile

2018
PLoS One
PMCID: 5922543
PMID: 29702662
DOI: 10.1371/journal.pone.0196461

[…] nd viability a Chi-squared proportion test was used. Lipidome composition (lipid concentration expressed as pmol/mg of fresh tissue) was visualized with a principal component analysis (PCA) using the FactoMineR package and the difference between groups was assessed with an ANOVA on the principal component scores, followed by a post-hoc Tuckey test. […]

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FactoMineR institution(s)
Agrocampus Rennes, UMR CNRS 6625, Rennes, France

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