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FAIRDOMHub specifications


Unique identifier OMICS_14213
Restrictions to use None
Community driven Yes
Data access File download, Browse
User data submission Allowed
Version 1.1.2
Maintained Yes



  • person_outline Carole Goble

Publication for FAIRDOMHub

FAIRDOMHub citations


SABIO RK: an updated resource for manually curated biochemical reaction kinetics

Nucleic Acids Res
PMCID: 5753344
PMID: 29092055
DOI: 10.1093/nar/gkx1065

[…] oftware tools and data workflows. These tools include CellDesigner (), VirtualCell (), Sycamore (), SBMLsqueezer (), cy3sabiork (http://apps.cytoscape.org/apps/cy3sabiork), Path2Models (), LigDig (), FAIRDOMHub (). Currently SABIO-RK is accessed mostly (ca. 90%) via web services, which underlines the importance of its integration in modelling and visualization tools.Standard export formats for the […]


Protein abundance of AKT and ERK pathway components governs cell type‐specific regulation of proliferation

Mol Syst Biol
PMCID: 5293153
PMID: 28123004
DOI: 10.15252/msb.20167258

[…] s Source Data for the respective figure. Data of quantified immunoblots have also been uploaded through Excemplify (Shi et al, ) to the SEEK platform (http://seek.sbepo.de/; Wolstencroft et al, ) and FAIRDOMHub (https://fairdomhub.org/).The mass spectrometry proteomics data have been deposited to the ProteomeXchange Consortium via the PRIDE (Vizcaíno et al, ) partner repository with the dataset id […]


SEEK: a systems biology data and model management platform

BMC Syst Biol
PMCID: 4702362
PMID: 26160520
DOI: 10.1186/s12918-015-0174-y

[…] the added reward of association and ownership of data, SEEK provides greater incentives for data sharing. The FAIRDOM project will harness the emerging sharing culture by implementing a European-wide FAIRDOMHub platform. FAIRDOMHub will consolidate existing SEEK resources, integrate openBIS and SEEK platforms, and provide an environment for consortia and independent research groups to share resear […]


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FAIRDOMHub institution(s)
Leiden Institute of Advanced Computer Science, Leiden University, Leiden, Netherlands; Heidelberg Institute for Theoretical Studies gGmbH, Heidelberg, Germany; Department of Biochemistry, University of Stellenbosch, Matieland, South Africa; School of Computer Science, The University of Manchester, Manchester, UK; University of Zurich, Zurich, Switzerland; ETH Zurich, Zurich, Switzerland
FAIRDOMHub funding source(s)
This work was supported by the Biotechnology and Biological Sciences Research Council (BBG0102181, BB/I004637/1, BB/M013189/1); Bundesministerium für Bildung und Forschung (0315749, 031A525, 0315781, 031A371); Klaus Tschira Foundation (KTS); SystemsX; DST/NRF - South Africa (SARCHI 82813 and TTK14051967526) and Netherlands Organisation for Scientific Research (832.14.004).

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