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Protocols

FAIRsharing specifications

Information


Unique identifier OMICS_17902
Name FAIRsharing
Alternative name BioSharing
Restrictions to use None
Community driven Yes
Data access Browse, Application programming interface
User data submission Allowed
Content license CC Attribution-ShareAlike
Maintained Yes

Maintainers


  • person_outline PeteMcQ
  • person_outline FAIRsharing Team

Additional information


https://fairsharing.org/educational/

Publication for FAIRsharing

FAIRsharing citations

 (10)
call_split

ONS: an ontology for a standardized description of interventions and observational studies in nutrition

2018
PMCID: 5928560
PMID: 29736190
DOI: 10.1186/s12263-018-0601-y
call_split See protocol

[…] ng terms. Besides assuring compliance with the OBO Foundry principles, we also ensured that the ONS followed the increasingly established FAIR principles []. As such, the ONS is also published in the FAIRsharing database (https://fairsharing.org/bsg-s001068).To enhance interoperability with other ontologies, the ONS builds on a subset of the Ontology for Biomedical Investigations (OBI) []. The sub […]

library_books

Datasets2Tools, repository and search engine for bioinformatics datasets, tools and canned analyses

2018
Sci Data
PMCID: 5827688
PMID: 29485625
DOI: 10.1038/sdata.2018.23

[…] In fact, there are now many centralized repositories that cover all areas of biomedical and biological research. These repositories are indexed for searching and browsing by sites such as DataMed and FAIRSharing. Similarly, several efforts have been made to aggregate and index bioinformatics tools, for example, OMICtools.While there are paths to start from a dataset landing page in a centralized b […]

library_books

ImmPort, toward repurposing of open access immunological assay data for translational and clinical research

2018
Sci Data
PMCID: 5827693
PMID: 29485622
DOI: 10.1038/sdata.2018.15

[…] urces such NCBI Gene, HGNC, MGI, Protein Ontology, and UniProt. ImmPort engages with several data standards communities such as the Human Immune Phenotyping Consortium (HIPC) Standards Working Group, BioSharing (fairsharing.org), the Patient Derived Tumor Xenograft Minimal Information (PDX-MI) working group and the NIH Big Data to Knowledge (BD2K) initiative (datascience.nih.gov/bd2k/about) throug […]

library_books

Towards an open grapevine information system

2016
PMCID: 5120350
PMID: 27917288
DOI: 10.1038/hortres.2016.56

[…] egiescience.edu/labs/huala-lab/projects/plant-genomics-interface-plain), and with any other specific purpose (for example, for phylogenetic studies in Ayres et al.). Other initiatives as for instance BioSharing (https://biosharing.org/), exist to publicize resources with a commitment to providing open data.With limited resources, a sensible strategy for the grapevine community is to promote the us […]

library_books

The Comparative Toxicogenomics Database: update 2017

2016
Nucleic Acids Res
PMCID: 5210612
PMID: 27651457
DOI: 10.1093/nar/gkw838

[…] nformation as part of the BioCreative consortium (–), facilitates the development of semantic standards for the environmental health science community (), complies with reporting standards set by the BioSharing Information Resources () and is a registered member (https://biosharing.org/biodbcore-000173) of BioDBcore ().Here, we provide our biennial database update, most notably highlighting our ne […]

library_books

Predicting structured metadata from unstructured metadata

2016
PMCID: 4892825
PMID: 28637268
DOI: 10.1093/database/baw080

[…] ncluding ImmPort, the data warehouse of immunology-related datasets led by Stanford (), The Human Immunology Project Consortium (), which channels experimental datasets to the ImmPort repository, The BioSharing Initiative () and The Stanford Digital Repository (), operated by Stanford University Libraries, which helps all Stanford investigators to archive and disseminate data of all kinds. We plan […]

Citations

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FAIRsharing institution(s)
Oxford e-Research Centre, University of Oxford, Oxford, UK
FAIRsharing funding source(s)
Partly supported by the bioCADDIE and the CEDAR projects (grants U24AI117966 and U54AI117925, respectively, from NIAID, NIH as part of the BD2K program), ELIXIR-UK Node (UK BBSRC BB/L005069/1), ELIXIR EXCELERATE project (EU H2020-INFRADEV-1-2015-1, 676559), COPO (BBSRC BB/L024101/1), eTRIKS (IMI 115446), MultiMot (EU H2020-EU.3.1, 634107), PhenoMeNal (EU H2020-EU.1.4.1.3, 654241) and the Oxford e-Research Centre, University of Oxford.

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