FALCON-X statistics

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Citations per year

Number of citations per year for the bioinformatics software tool FALCON-X
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Tool usage distribution map

This map represents all the scientific publications referring to FALCON-X per scientific context
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Protocols

FALCON-X specifications

Information


Unique identifier OMICS_26945
Name FALCON-X
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 0.2
Stability Stable
Requirements
R(≥3.0.1)
Source code URL https://cran.r-project.org/src/contrib/falconx_0.2.tar.gz
Maintained Yes

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Documentation


Maintainers


  • person_outline Nancy Zhang
  • person_outline Kara Maxwell
  • person_outline Hao Chen
  • person_outline Yuchao Jiang
  • person_outline Katherine Nathanson

Publication for FALCON-X

FALCON-X citations

 (6)
library_books

Ovule identity mediated by pre mRNA processing in Arabidopsis

2018
PLoS Genet
PMCID: 5785034
PMID: 29329291
DOI: 10.1371/journal.pgen.1007182

[…] on solid media (-Ura, -His, -Trp +glucose). Induction for testing protein-protein association was assayed growing the resulting yeast strains on plates in the presence of galactose and raffinose (DB Falcon). X-gal was used for colorimetric assays on plates (SIGMA), and ONPG (2-Nitrophenyl β-D-galactopyranoside, SIGMA) for β-galactosidase liquid experiments. The Clontech protocol book was followed […]

library_books

K homology Nuclear Ribonucleoproteins Regulate Floral Organ Identity and Determinacy in Arabidopsis

2015
PLoS Genet
PMCID: 4450054
PMID: 25658099
DOI: 10.1371/journal.pgen.1004983

[…] media (-Ura, -His, -Trp +glucose). Induction for testing protein-protein association was assayed growing the resulting yeast strains on plates or liquid in the presence of galactose and raffinose (DB Falcon). X-gal was used for colorimetric assays on plates, and ONPG (2-Nitrophenyl β-D-galactopyranoside, SIGMA) for β-galactosidase liquid experiments. The Clontech protocol book was followed for all […]

library_books

Differential expression of the HvCslF6 gene late in grain development may explain quantitative differences in (1,3;1,4) β glucan concentration in barley

2015
PMCID: 4298655
PMID: 25620877
DOI: 10.1007/s11032-015-0208-6

[…] using progeny from seven independent cross combinations: Derkado × B83-12/21/5 (Igartua et al. ), Beka × Logan (Molina-Cano et al. ), CDC Bold × TR251 (Li et al. ), H93174006 × Merit (Cory et al. ), Falcon × Azhul (Islamovic et al. ), Skardu Oldings × Static (Steele et al. ) and m351 × Steptoe (Hu et al. ).According to sequence data presented by Taketa et al. (), Cory et al. () and Hu et al. (), […]

call_split

Comparative Systems Biology Reveals Allelic Variation Modulating Tocochromanol Profiles in Barley (Hordeum vulgare L.)

2014
PLoS One
PMCID: 4018352
PMID: 24820172
DOI: 10.1371/journal.pone.0096276
call_split See protocol

[…] ithin the model, each genotype, location, and year were treated as separate traits for QTL identification ().QTL were detected with WinQTL Cartographer , using marker locus positions from an existing Falcon x Azhul SNP map . Experiment-wise thresholds, determined through 1000 permutations of the data, were used to determine significant QTL . Peaks were initially detected using single marker analys […]

library_books

Neuron Specific Regulation of Associative Learning and Memory by MAGI 1 in C. elegans

2009
PLoS One
PMCID: 2696103
PMID: 19551147
DOI: 10.1371/journal.pone.0006019

[…] nd a chemotaxis index was calculated as described .Chemotaxis to water-soluble compounds was assessed as described with some modifications . Pairs of opposite quadrants of four-quadrant Petri plates (Falcon X plate, Becton Dickinson Labware) were filled with buffered agar (2% agar, 5 mM KH2PO4/K2HPO4 pH 6.0, 1 mM CaCl2 and 1 mM MgSO4), either containing 25 mM NaCl or no salt. Adjacent quadrants we […]

library_books

A Conserved Function of C. elegans CASY 1 Calsyntenin in Associative Learning

2009
PLoS One
PMCID: 2654071
PMID: 19287492
DOI: 10.1371/journal.pone.0004880

[…] a four-quadrant CTX plate to test chemotaxis and liquid was removed with a tissue paper. Chemotaxis plates were prepared one day in advance. Pairs of opposite quadrants of four-quadrant Petri plates (Falcon X plate, Becton Dickinson Labware) were filled with 16 ml buffered agar (2% agar, 5 mM KPO4 pH 6, 1 mM CaCl2 and 1 mM MgSO4), either containing 25 mM NaCl or not. Adjacent quadrants were connec […]


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FALCON-X institution(s)
University of California, Davis, CA, USA; University of Pennsylvania, Philadelphia, PA, USA
FALCON-X funding source(s)
Supported in part by the Department of Defense (W81XWH-13-1-0338) and the Konner Family Foundation, in part by the Basser Center for BRCA Research, and in part by a fellowship from the Sloan foundation and NIH Grant R01 HG006137.

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