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Citations per year

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Popular tool citations

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Associated diseases

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FamAnn specifications

Information


Unique identifier OMICS_02204
Name FamAnn
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data Some snpEff or Variant Effect Predictor (VEP) -annotated files.
Input format VCF
Output data An Excel-compatible output that lists all variants shared by multiple families and variants segregated in each family and a list of genes, which includes all the genes harboring variants shown in the variant output file.
Output format TXT
Operating system Unix/Linux, Mac OS, Windows
Programming languages Perl
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

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Maintainers


  • person_outline W. Richard McCombie <>
  • person_outline Jianchao Yao <>

Additional information


https://sites.google.com/site/famannotation/documentation

Publication for FamAnn

FamAnn in pipeline

2014
PMCID: 4266634
PMID: 25506935
DOI: 10.1371/journal.pone.0114903

[…] by integrating the results of analyses by multiple publicly available and developed in-house bioinformatics tools. there are more analytical platforms, such as jannovar , kggseq , mtoolbox and famann . moreover, multiple resources support the analysis of non-coding regions and their regulatory roles . most of these existing resources, understandably, address either the analysis of coding […]


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FamAnn in publication

PMCID: 4266634
PMID: 25506935
DOI: 10.1371/journal.pone.0114903

[…] by integrating the results of analyses by multiple publicly available and developed in-house bioinformatics tools. there are more analytical platforms, such as jannovar , kggseq , mtoolbox and famann . moreover, multiple resources support the analysis of non-coding regions and their regulatory roles . most of these existing resources, understandably, address either the analysis of coding […]


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FamAnn institution(s)
Stanley Institute for Cognitive Genomics, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA; Department of Biological Chemistry, Howard Hughes Medical Institute, University of California, Los Angeles, CA, USA; Department of Molecular, Cellular, and Developmental Biology, University of California, Los Angeles, CA, USA
FamAnn funding source(s)
Supported by a grant from T. and V. Stanley.

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