FamFetch pipeline

FamFetch specifications


Unique identifier OMICS_13165
Name FamFetch
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Computer skills Advanced
Version 2.0
Stability Stable
Requirements Java
Maintained Yes


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  • person_outline Guy Perriere <>

Publication for FamFetch

FamFetch citation

PMCID: 2600815

[…] default parameters), and phylogenetic trees with phyml [58]. phylogenies are computed on conserved blocks of the alignments selected with gblocks [59]. using the treepattern functionality of the famfetch client for homolens, which allows scanning for gene tree topologies [60], we selected sets of genes with or without duplications on specific branches of the vertebrate phylogenetic tree., […]

FamFetch institution(s)
INRIA Rhône-Alpes, Saint Ismier, France; Laboratoire de Biométrie et Biologie Évolutive, UMR CNRS 5558, Université Claude Bernard Lyon 1, Villeurbanne, France
FamFetch funding source(s)
This work has been supported by EEC, CNRS and INRIA.

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