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FamPlex specifications


Unique identifier OMICS_24450
Name FamPlex
Alternative name Bioentities
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Maintained Yes




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  • person_outline John Bachman
  • person_outline Benjamin Gyori

Publication for FamPlex

FamPlex citation


Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments

Nucleic Acids Res
PMCID: 2447758
PMID: 18515841
DOI: 10.1093/nar/gkn318

[…] l, can also be applied and are considered to give similar results (). When the entity tested for enrichment is not a discrete class but a continuous variable, such as in the case of text mining-based bioentities, the test used is Kolmogorow-Smirnov. Since many tests are conducted in order to check all the gene modules, adjustment for multiple testing, such as FDR () of others, is used here. See re […]

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FamPlex institution(s)
Laboratory of Systems Pharmacology, Department of Systems Biology, Harvard Medical School, Boston, MA, USA
FamPlex funding source(s)
Supported by DARPA grants W911NF-14-1-0397 and 329 W911NF-15-1-0544.

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