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FAS-DPD | A tool to design consensus degenerated oligonucleotides

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A package to design degenerate primers for PCR. FAS-DPD is very strict in the search of conserved regions and minimizes the amount of degeneracy incorporated at this end. The software is designed to use multiple alignments of proteins or nucleic acids and constructs a consensus degenerate sequence from that, which is then used to design the putative primers. This tool allows a more efficient search for enzymes and other proteins with commercial or biotechnological importance, making for a faster and cheaper research process.

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FAS-DPD forum

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FAS-DPD classification

FAS-DPD specifications

Unique identifier:
OMICS_02340
Software type:
Package/Module
Restrictions to use:
None
Output data:
Degenerate PCR primers
Programming languages:
Java
Computer skills:
Advanced
Stability:
Stable
Name:
Family-Specific Degenerate Primer Design
Interface:
Command line interface
Input data:
DNA or protein sequence alignments
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 3.0
Version:
1.2.2
Maintained:
Yes

FAS-DPD distribution

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Publications

Institution(s)

LIGBCM-Área Virosis Emergentes y Zoonóticas, Universidad Nacional de Quilmes, Buenos Aires, Argentina; LIGBCM-Área Virosis de Insectos, Universidad Nacional de Quilmes, Buenos Aires, Argentina

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