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FASSI specifications

Information


Unique identifier OMICS_23811
Name FASSI
Alternative name Fingerprint and ASSembly Incorporation
Software type Application/Script
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux
Programming languages Perl
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes

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  • person_outline Steven Jones <>

Publication for Fingerprint and ASSembly Incorporation

FASSI in publications

 (28)
PMCID: 5909266
PMID: 29673368
DOI: 10.1186/s13014-018-1019-9

[…] 2 cm cannot be visualized on the kv projection. thus, a means to evaluate the estimation model without updating during beam irradiation is required, regardless of whether gold markers are implanted., fassi et al. developed a target estimation method using a patient-specific breathing model derived a priori from 4d-ct images []. model parameters were retrieved and updated for each treatment fractio […]

PMCID: 5895734
PMID: 29675003
DOI: 10.3389/fmicb.2018.00636

[…] expression of this mirna is induced in h. pylori-infected t cells and primary macrophages in a foxp3-dependent manner, suggesting a functional interplay between mir-155 and the host immune response (fassi fehri et al., ). mir-155 also targets ikb kinase-ε (ikk-ε), sma- and mad-related protein 2 (smad2), and fas-associated death domain protein (fadd), reducing the release of pro-inflammatory […]

PMCID: 5829085
PMID: 29487330
DOI: 10.1038/s41598-018-22023-3

[…] accuracy of <2 mm in thirteen anatomical landmarks was achieved, which is superior over conventional methods using the phasic, amplitude, or phasic & amplitude as external surrogates. fassi et al. also proposed a similar tracking model by correlating internal motion with three external surface surrogates (i.e., the baseline, amplitude and phase extracted from external surface […]

PMCID: 5902389
PMID: 29397573
DOI: 10.1002/mgg3.362

[…] and impair ph loop binding to pip2., our data suggest a previously undescribed milder phenotype associated with a missense genetic variant in the ph domain of dynamin 1., brereton e , fassi e , araujo gc , et al. mutations in the ph domain of dnm1 are associated with a nonepileptic phenotype characterized by developmental delay and neurobehavioral abnormalities. mol genet genomic […]

PMCID: 5674859
PMID: 29110693
DOI: 10.1186/s13014-017-0911-z

[…] median distances of (2.9 ± 3.0) mm were determined between those landmarks. the authors concluded that the modelled 4dcts can be used for 4d dose calculations in photon therapy. for the same model fassi et al. determined changes in water equivalent path-length of <1.9 mm []., 4d optimized treatment planning uses time as an additional degree of freedom [, ]. it can serve as a motion […]


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FASSI institution(s)
British Columbia Cancer Agency, Genome Sciences Centre, Vancouver, BC, Canada; Washington University School of Medicine, Genome Sequencing Center, St. Louis, MO, USA; Department of Computer Science, Iowa State University, Ames, IO, USA; U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA, USA; The Michael Smith Laboratories, Department of Microbiology and Immunology, The University of British Columbia, Vancouver, BC, Canada
FASSI funding source(s)
Supported by a grant from the National Human Genome Research Institute (NHGRI U54 HG00307).

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