FAST DB statistics

Tool stats & trends

Looking to identify usage trends or leading experts?

Protocols

FAST DB specifications

Information


Unique identifier OMICS_05683
Name FAST DB
Restrictions to use None
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Maintainer


  • person_outline Didier Auboeuf

Additional information


https://www.easana.com/

Publication for FAST DB

FAST DB citations

 (18)
library_books

Alternative splicing of CNOT7 diversifies CCR4–NOT functions

2017
Nucleic Acids Res
PMCID: 5737658
PMID: 28591869
DOI: 10.1093/nar/gkx506

[…] Affymetrix Human Exon 1.0 ST Array dataset analysis was conducted using EASANA® (GenoSplice technology), which is based on the FAST DB® annotations (,). Exon Array data were normalized using quantile normalization. Background corrections were made with antigenomic probes, which were selected as described previously (–). We fo […]

call_split

Transcriptome wide analysis of alternative RNA splicing events in Epstein Barr virus associated gastric carcinomas

2017
PLoS One
PMCID: 5426614
PMID: 28493890
DOI: 10.1371/journal.pone.0176880
call_split See protocol

[…] The splicing patterns of selected genes were visualized Using the FAST-DB or EASANA suite. DNA sequences of representative transcripts presenting short and long isoforms were downloaded and translated into proteins using ExPASy translation tool [] Predicted proteins […]

call_split

An Orchestrated Intron Retention Program in Meiosis Controls Timely Usage of Transcripts during Germ Cell Differentiation

2017
Dev Cell
PMCID: 5392497
PMID: 28366282
DOI: 10.1016/j.devcel.2017.03.003
call_split See protocol

[…] ize estimation were performed using FastQC, Picard-Tools, Samtools and rseqc. Reads were mapped using STARv2.4.0 (). Gene expression regulation study was performed as already described () using Mouse FAST DB v2013_2 annotations. Only genes expressed in at least sp.tids or sp.cytes were further analyzed. Genes were considered as expressed if their rpkm value was greater than 97,5% of the background […]

library_books

Translation in astrocyte distal processes sets molecular heterogeneity at the gliovascular interface

2017
PMCID: 5368712
PMID: 28377822
DOI: 10.1038/celldisc.2017.5

[…] ing Expression console (Affymetrix, Santa Clara, CA, USA) and further analyses and visualization were made using EASANA (GenoSplice Technology, www.genosplice.com), which is based on the GenoSplice’s FAST DB annotations []. Gene Array data were normalized using quantile normalization. Background corrections were made with antigenomic probes selected as described previously []. Only probes targetin […]

library_books

Global Profiling of the Cellular Alternative RNA Splicing Landscape during Virus Host Interactions

2016
PLoS One
PMCID: 5012649
PMID: 27598998
DOI: 10.1371/journal.pone.0161914

[…] Using the FAST-DB or EASANA suite, the splicing patterns of a gene of interest was visualized. DNA sequences of representative transcripts presenting long and short isoforms were downloaded and translated into […]

library_books

Nuclear poly(A) binding protein aggregates misplace a pre mRNA outside of SC35 speckle causing its abnormal splicing

2016
Nucleic Acids Res
PMCID: 5159528
PMID: 27507886
DOI: 10.1093/nar/gkw703

[…] led with the Expression console (Affymetrix). Affymetrix Human Exon 1.0 ST Array dataset analysis and visualization were made using EASANA® (GenoSplice technology), which is based on the GenoSplice's FAST DB® annotations (). Exon Array data were normalized using quantile normalization. Background corrections were made with antigenomic probes and probes were selected as described previously (,). On […]

Citations

Looking to check out a full list of citations?

FAST DB institution(s)
INSERM U685/AVENIR, Centre G Hayem, Institut Universitaire d'Hématologiem, Paris, France

FAST DB reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review FAST DB