FaST-LMM-EWASher statistics

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FaST-LMM-EWASher specifications

Information


Unique identifier OMICS_07514
Name FaST-LMM-EWASher
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python, R
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for FaST-LMM-EWASher

FaST-LMM-EWASher in publications

 (3)
PMCID: 5656403
PMID: 29046582
DOI: 10.1038/s41559-017-0229-0

[…] approaches, such as surrogate variable analysis (sva: originally designed for differential gene expression analysis), and approaches specifically developed with dna methylation data in mind (e.g., fast-lmm-ewasher and reffreeewas), have been suggested for this purpose. in applying them, researchers will need to evaluate whether the assumptions of these methods are met in their data. […]

PMCID: 5391562
PMID: 28410574
DOI: 10.1186/s12859-017-1611-2

[…] methods: we compared eight cell-type correction methods including the method in the minfi r package, the method by houseman et al., the removing unwanted variation (ruv) approach, the methods in fast-lmm-ewasher, refactor, reffreeewas, and reffreecellmix r programs, along with one approach utilizing surrogate variables (svas). we first evaluated the association of dna methylation at each cpg […]

PMCID: 4625103
DOI: 10.1186/1471-2105-16-S15-P7

[…] and infant cohort study[,]. we compared five cell-type correction methods, including four methods recently proposed: the method implemented in the minfi r package[], the method by houseman et al.[], fast-lmm-ewasher[], reffreeewas[]) and one method using surrogate variables[] (svas). the association of dna methylation at each cpg site across the whole genome with maternal arsenic exposure levels […]


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FaST-LMM-EWASher institution(s)
eScience Research Group, Microsoft Research, Los Angeles, CA, USA; The Broad Institute of MIT and Harvard, Cambridge, MA, USA; School of Engineering and Applied Sciences, Harvard University, Cambridge, MA, USA; Harvard Medical School, Boston, MA, USA; Massachusetts General Hospital, Boston, MA, USA

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