FAME specifications

Unique identifier:
OMICS_15748
Alternative name:
FAME 2
Interface:
Graphical user interface
Output data:
A page which displays the structure of the compound with the predicted SoMs highlighted with yellow circles, the probabilities generated by the extra trees model (the percentage of trees that predicted a given atom as a SoM), the atoms that scored above the decision threshold of the current model, some metadata and helpful information as well as the model used for the predictions.
Operating system:
Unix/Linux, Mac OS, Windows
Stability:
Stable
Maintained:
Yes
Name:
FAst Metabolizer
Software type:
Package/Module
Restrictions to use:
License purchase required
Output format:
HTML
Computer skills:
Medium
Requirements:
Java

versioning

tutorial arrow
×
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free to upload your code and get a DOI

No versioning.

FAME support

Maintainers

  • Robert Glen <>
  • Johannes Kirchmair <>

forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free to badge your contributorship

Publications

Institution(s)

Faculty of Mathematics, Informatics and Natural Sciences, Department of Computer Science, Center for Bioinformatics, Universitat Hamburg, Hamburg, Germany; CZ-OPENSCREEN: National Infrastructure for Chemical Biology, Laboratory of Informatics and Chemistry, Faculty of Chemical Technology, University of Chemistry and Technology Prague, Prague, Czech Republic

Funding source(s)

Supported by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) project number KI 2085/1-1 and by the Ministry of Education of the Czech Republic project numbers MSMT No 20-SVV/2017, NPU ILO1220, and LM2015063 and the Erasmus+ Programme of the European Commission.

User review

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

No review has been posted.

Related Tools