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Fast Phylogenetic Scaffolding of Ancient Contigs FPSAC

Sequencing ancient genomes raises specific problems, because of the decay and fragmentation of ancient DNA among others, making the scaffolding of ancient contigs challenging. FPSAC is a general method to combine both sequencing and computational reconstruction.

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FPSAC forum

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FPSAC classification

FPSAC specifications

Software type:
Package/Module
Restrictions to use:
None
Computer skills:
Advanced
Maintained:
Yes
Interface:
Command line interface
Operating system:
Unix/Linux
Stability:
Stable

FPSAC distribution

versioning

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No versioning.

FPSAC support

Maintainer

  • Cedric Chauve <>

Credits

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Publications

Institution(s)

Department of Mathematics, Simon Fraser University, Burnaby (BC), Canada; International Graduate Training Center in Mathematical Biology, Pacific Institute for the Mathematical Sciences, Vancouver (BC), Canada; INRIA Grenoble Rhône-Alpes, Montbonnot, France; Université de Lyon 1, Laboratoire de Biométrie et Biologie Évolutive, CNRS UMR5558 Villeurbanne, France; LaBRI, Université Bordeaux I, Talence, France

Funding source(s)

Natural Sciences and Engineering Research Council of Canada Discovery Grant, a Pacific Institute for the Mathematical Sciences International Graduate Training Centre Fellowship and Agence Nationale pour la Recherche-10-BINF-01-01 Ancestrome

Link to literature

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