Fast-SAXS statistics

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Fast-SAXS specifications


Unique identifier OMICS_10456
Name Fast-SAXS
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes


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Publication for Fast-SAXS

Fast-SAXS in publications

PMCID: 5929515
PMID: 29715277
DOI: 10.1371/journal.pone.0196662

[…] by , in which we showed the saxs profiles calculated based on the sampled snapshots with (b) and without (c) the inter-domain contacting interactions at saturated zinc concentration. the fast-saxs-pro method was used to compute the saxs profiles of ncp7 from the sampled coarse-grained conformations []. the saxs profiles calculated based on the structure ensemble by solution nmr (pdb […]

PMCID: 5290277
PMID: 28134253
DOI: 10.1038/ncomms14011

[…] running the program in ‘slow' mode. subsequently, damclust was used to cluster the models into groups, and then to identify individual models that best represented each grouping. analysis with foxs (fast saxs profile computation with debye formula) indicated that a single representative dummy atom model, from the largest cluster of 27 related models (deviation 0.61), provided the best overall […]

PMCID: 4881967
PMID: 27227775
DOI: 10.1371/journal.pone.0156043

[…] 4 ps in the md simulation trajectory, and the decoys are saved after each mc judgment for results analysis. to make a mc judgment, the saxs intensity profile for a given structure is computed using fast-saxs-pro[]. the acceptance probability in the mc judgment is given by the metropolis criterion[], i.e., min{exp[-(en-en-1]/kbt), 1}. here, t is the simulation temperature, kb is the boltzmann […]

PMCID: 3817170
PMID: 24223750
DOI: 10.1371/journal.pone.0078007

[…] landscape ., existing approaches can be supplemented by experimental information from saxs by adding a final step of filtering generated models to those best fitting the experimental data, as in fast-saxs rna , ., attempts have been made to produce an approximate model of flexible rna molecules using residual dipolar coupling (rdc) data acquired from nuclear magnetic resonance (nmr) […]

PMCID: 3427135
PMID: 22800408
DOI: 10.1186/1472-6807-12-17

[…] same profile using χ, but cannot compare the fit of one model against two different experimental profiles., to assess the performance of different profile calculation programs (zernike polynomials, fast-saxs, aquasaxs, crysol and foxs), we compute the theoretical scattering for a model protein glucose isomerase [pdb:2g4j] (figure ) and fit it to the experimental profile. a high accuracy saxs […]

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Fast-SAXS institution(s)
Department of Biochemistry and Molecular Biology, Gordon Center for Integrative Science, The University of Chicago, Chicago, IL, USA
Fast-SAXS funding source(s)
This work was supported by the National Institute of Health through grant No. CA-093577 and by a joint grant from the University of Chicago Cancer Center and Argonne National Laboratory (grant No. UCCC/ANL).

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