FSA specifications

Information


Unique identifier OMICS_03735
Name Fast Statistical Alignment
Interface Web user interface
Restrictions to use None
License GNU General Public License version 2.0
Computer skills Basic
Stability Stable
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/Fast_statistical_alignment

FSA article

FSA citations

 (3)
2017
PMCID: 5480830

[…] can vary depending on the length of the mature, star, and loop sequences). this flanking sequence adds robustness to our alignments of already very short sequences. sequences were aligned using the fast statistical alignment algorithm (fsa) [67]. trees were then generated using raxml with the following parameters: -f a -m gtrgamma -p 12345 -x 12345 -# 1000 -s -n [68]. mature and excised mirna […]

2014
PMCID: 4030478

[…] acceptable genes were concatenated end to end, producing a single continuous sequence for each isolate. concatenated sequences were then aligned against each other using fast statistical analysis (fsa), resulting in a multiple sequence alignment of the core genome (40). phylogenetic trees were estimated using raxml using 100 bootstraps and final trees drawn in figtree (41)., s.¬†epidermidis […]

2012
PMCID: 3463246

[…] distribution of morphogenic activity in the bacterial species tested (table 1), a sequence alignment of 16s rdna genes from each species was generated by iterative pairwise comparisons using fsa (bradley et al. 2009). poorly aligned regions were removed by gblocks version 0.91b (castresana 2000; talavera and castresana 2007) using default block parameters. a distance matrix (distance […]

FSA institution(s)
Department of Mathematics, University of California Berkeley, Berkeley, CA, USA

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