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Associated diseases

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FAST specifications

Information


Unique identifier OMICS_03640
Name FAST
Alternative name Fast Alignment and Search Tool
Interface Web user interface
Restrictions to use None
Input format PDB
Operating system Unix/Linux, Mac OS
Computer skills Basic
Stability Stable
Maintained No

Maintainer


This tool is not available anymore.

Information


Unique identifier OMICS_03640
Name FAST
Alternative name Fast Alignment and Search Tool
Restrictions to use Academic or non-commercial use

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Maintainer


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Publication for Fast Alignment and Search Tool

FAST in publications

 (3)
PMCID: 3849742
PMID: 24079299
DOI: 10.1186/1757-4749-5-28

[…] providing appropriate template structures (see 'results and discussion’). for checking the structural similarity, the homology models were superposed with the help of the freely available software 'fast alignment and search tool’ [] and rmsd value(s) were noted., the network of interactions was modeled under boolean/logical framework using the tool 'ginsim’ (http://ginsim.org/home), […]

PMCID: 2039753
PMID: 17883866
DOI: 10.1186/1471-2105-8-355

[…] extension; dalilite, standalone version of dali (distance matrix alignment); dssp, definition of secondary structure of proteins given a set of 3d coordinates; fast, recursive acronym for fast alignment and search tool; fasta3, dna and protein sequence alignment software package; lock2, improvements over lock (hierarchical protein structure superposition); matras, markovian transition […]

PMCID: 1702494
PMID: 17130161
DOI: 10.1093/nar/gkl788

[…] that the contact metric sensitivity is higher, across all specificity levels tested, than those obtained with basic local alignment and search tool (blast) (), sgm, pride2, and nearly as high as fast alignment and search tool (fast) (), a detailed 3d alignment method shown to be computationally more efficient and accurate for structural recognition than standard alignment algorithms, […]


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FAST institution(s)
Bioinformatics Program, Boston University, Boston, MA, USA; Biomedical Engineering Department, Boston University, Boston, MA, USA
FAST funding source(s)
Supported by the National Science Foundation, NSF DBI-0078194.

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