fast5_scripts specifications

Information


Unique identifier OMICS_24107
Name fast5_scripts
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input format FAST5, FASTQ
Output format FASTQ
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Maintained Yes

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fast5_scripts citation

library_books

DNA extraction from primary liquid blood cultures for bloodstream infection diagnosis using whole genome sequencing

2018
J Med Microbiol
PMCID: 5882078
PMID: 29458686
DOI: 10.1099/jmm.0.000664

[…] es and resistance mechanisms for S. aureus. The number of bases recovered, read number and length statistics, and accuracy, were calculated for all runs using nanoStats.py (https://github.com/nick297/fast5_scripts; commit vb88e14a). […]

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