FASTA Length specifications

Information


Unique identifier OMICS_29393
Name FASTA Length
Alternative name FASTA Sequence Lengths
Interface Web user interface
Restrictions to use None
Input format FASTA
Computer skills Basic
Version 1.0
Stability Stable
Maintained Yes

Additional information


A desktop version of the tool is available on the homepage.

FASTA Length citations

 (2)
library_books

The Complete Chloroplast Genome Sequence of a Relict Conifer Glyptostrobus pensilis: Comparative Analysis and Insights into Dynamics of Chloroplast Genome Rearrangement in Cupressophytes and Pinaceae

2016
PLoS One
PMCID: 4999192
PMID: 27560965
DOI: 10.1371/journal.pone.0161809

[…] GB of sequence, with an average read length of 301 bp, was obtained on the Illumina MiSeq platform.To remove potential low-quality bases, raw reads were trimmed to 200 bp in length using an in-house ‘fasta_length_trimmer’ script. Then, clean reads were assembled de novo using Velvet Assembler version 1.2.07 []. Initial contigs were analyzed by performing a BLASTn search against NCBI nr/nt database […]

library_books

The complete chloroplast genome sequence of the relict woody plant Metasequoia glyptostroboides Hu et Cheng

2015
Front Plant Sci
PMCID: 4468836
PMID: 26136762
DOI: 10.3389/fpls.2015.00447

[…] n average read length of 301 bp, was obtained on the MiSeq platform.The complete cp genome sequence was assembled as follows. First, the MiSeq reads was trimmed to 200 bp in length using an in-house ‘fasta_length_trimmer’ script to remove the potential low quality bases. Then, the initial contigs were produced with cleaned reads using Velvet Assembler version 1.2.07 (). Contigs were selected for a […]

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