FASTA pipeline

FASTA specifications


Unique identifier OMICS_00994
Alternative names FASTA2, FASTA3
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes


  • person_outline William Pearson <>

Publications for FASTA

FASTA IN pipelines

PMCID: 5868767
PMID: 29579047
DOI: 10.1371/journal.pone.0192851

[…] environment for the display of phylogenetic trees, a program for creating multiple sequence alignments, program for clustering protein sequences based on bit scores derived from blastp, ssearch36, fasta36 or ublast, a program for building phylogenetic trees, a suite of programs for phylogenetic analysis, program for constructing protein trees using blast bit scores rather than multiple […]

PMCID: 5705957
PMID: 29072602
DOI: 10.3390/toxins9110342

[…] and sp6 promoters. the dna sequence data were analyzed and translated into the amino acid sequence using mega 6 software [27]. protein sequence homology in the swiss-prot database was searched using fasta3 [28] and sequence alignments were generated with clustal w 2.1. the theoretical isoelectric point was calculated with expasy [29]., for the first dimension, 30 µg of bacol pla2 was applied […]

PMCID: 3027613
PMID: 21297863
DOI: 10.1371/journal.pone.0014519

[…] sequence from methanoculleus bourgensis (genbank accession ay196674) was used as an assembly template. the pyrosequencing reads were aligned to the reference sequence using ‘align0’ from the fasta3 package [48] and then clustered into several groups based on their snp (single nucleotide polymorphism) content. afterwards, each of the resulting groups of reads was separately assembled […]

PMCID: 3068122
PMID: 21406087
DOI: 10.1186/1471-213X-11-19

[…] and information in ncbi, blast, flybase, clustalw and fasta databases., ik performed the experiments. mfr supervised the molecular biology experiments. ls conceived and supervised the study, and wrote the manuscript. all authors contributed […]

FASTA institution(s)
Department of Biochemistry and Molecular Genetics, University of Virginia School of Medicine, Charlottesville, VA, USA

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