FASTA pipeline

FASTA specifications

Information


Unique identifier OMICS_00994
Name FASTA
Alternative names FASTA2, FASTA3
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/FASTA

Maintainer


  • person_outline William Pearson <>

Publications for FASTA

FASTA IN pipelines

 (4)
2018
PMCID: 5868767
PMID: 29579047
DOI: 10.1371/journal.pone.0192851

[…] environment for the display of phylogenetic trees, a program for creating multiple sequence alignments, program for clustering protein sequences based on bit scores derived from blastp, ssearch36, fasta36 or ublast, a program for building phylogenetic trees, a suite of programs for phylogenetic analysis, program for constructing protein trees using blast bit scores rather than multiple […]

2017
PMCID: 5705957
PMID: 29072602
DOI: 10.3390/toxins9110342

[…] and sp6 promoters. the dna sequence data were analyzed and translated into the amino acid sequence using mega 6 software [27]. protein sequence homology in the swiss-prot database was searched using fasta3 [28] and sequence alignments were generated with clustal w 2.1. the theoretical isoelectric point was calculated with expasy [29]., for the first dimension, 30 µg of bacol pla2 was applied […]

2011
PMCID: 3027613
PMID: 21297863
DOI: 10.1371/journal.pone.0014519

[…] sequence from methanoculleus bourgensis (genbank accession ay196674) was used as an assembly template. the pyrosequencing reads were aligned to the reference sequence using ‘align0’ from the fasta3 package [48] and then clustered into several groups based on their snp (single nucleotide polymorphism) content. afterwards, each of the resulting groups of reads was separately assembled […]

2011
PMCID: 3068122
PMID: 21406087
DOI: 10.1186/1471-213X-11-19

[…] and information in ncbi http://www.ncbi.nlm.nih.gov, blast http://www.ncbi.nlm.nih.gov/blast, flybase http://flybase.org/, clustalw http://www.ebi.ac.uk/clustalw and fasta http://www.ebi.ac.uk/tools/fasta33/index.htm databases., ik performed the experiments. mfr supervised the molecular biology experiments. ls conceived and supervised the study, and wrote the manuscript. all authors contributed […]

FASTA institution(s)
Department of Biochemistry and Molecular Genetics, University of Virginia School of Medicine, Charlottesville, VA, USA

FASTA reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review FASTA