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Fastahack specifications


Unique identifier OMICS_20516
Name Fastahack
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input format FASTA, FA
Output data Some sequences and subsequences.
Output format FAI
Operating system Unix/Linux
Programming languages C, C++
License MIT License
Computer skills Advanced
Stability Stable
Maintained Yes




No version available


  • person_outline Erik Garrison <>

Fastahack citation


High resolution mapping reveals hundreds of genetic incompatibilities in hybridizing fish species

PMCID: 4080447
PMID: 24898754
DOI: 10.7554/eLife.02535.024

[…] sets of the same size generated by randomly sampling regions throughout the genome that were not in significant ld (p>0.013 with all unlinked regions) using a custom perl script and the program fastahack ( for ld regions that included only 1 marker (n = 60), we included the flanking region defined by the closest 5′ and 3′ marker. to analyze coding regions, […]

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Fastahack institution(s)
Marth Lab, Boston College, Chestnut Hill, MA, USA

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