FastANI specifications

Information


Unique identifier OMICS_24447
Name FastANI
Alternative name Fast Average Nucleotide Identity
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C, C++
License Apache License version 2.0
Computer skills Advanced
Version 1.0
Stability Stable
Source code URL https://codeload.github.com/ParBLiSS/FastANI/tar.gz/v1.0
Maintained Yes

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Versioning


No version available

Maintainers


  • person_outline Srinivas Aluru
  • person_outline Konstantinos Konstantinidis

Publication for Fast Average Nucleotide Identity

FastANI citation

library_books

Whole genome sequencing of a large collection of Myroides odoratimimus and Myroides odoratus isolates and antimicrobial susceptibility studies

2018
PMCID: 5884818
PMID: 29618738
DOI: 10.1038/s41426-018-0061-x

[…] ackage version 7. Protein sequences were created using DNASTAR Lasergene 14.0.10. (DNASTAR). Average nucleotide identity (ANI) values have been calculated on the whole-genome level using the software FastANI (https://github.com/ParBLiSS/FastANI) (TableĀ ). Therefore, all M. odoratimimus strains used in this study were compared with M. odoratimimus CCUG39352T (draft assembly ASM148541v1, https://www […]

FastANI institution(s)
School of Computational Science and Engineering, Georgia Institute of Technology, Atlanta, GA, USA; School of Civil and Environmental Engineering, Georgia Institute of Technology, Atlanta, GA, USA; School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, USA; National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA; Institute for Data Engineering and Science, Georgia Institute of Technology, Atlanta, GA, USA
FastANI funding source(s)
Supported by US National Science Foundation awards 1356288 and IIS-1416259.

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