FastCall specifications

Information


Unique identifier OMICS_21524
Name FastCall

Maintainer


This tool is not maintained anymore.

Publication for FastCall

FastCall citations

 (2)
library_books

Xome Blender: A novel cancer genome simulator

2018
PLoS One
PMCID: 5886411
PMID: 29621252
DOI: 10.1371/journal.pone.0194472

[…] pool of normal controls, somatic mode to compare one sample to its corresponding normal control. Finally, heterogeneous shifting level model (HSLM) is applied to segment the two combined profiles and FastCall algorithm classifies each segmented region into five possible states (two-copy deletion, one-copy deletion, normal, one-copy duplication and multiple-copy amplification). The results are prov […]

library_books

Tumor diversity and evolution revealed through RADseq

2017
Oncotarget
PMCID: 5522028
PMID: 28611298
DOI: 10.18632/oncotarget.18355

[…] ld-type strain after normalization of total reads counts. The R package “DNAcopy” was used to segment the chromosome via read depth ratio of each tested sample. To resolve the hyper-segmentation, the FastCall algorithm [] was used to merge neighboring segments with similar copy numbers. […]

FastCall institution(s)
Diagnostic Genetic Unit, Careggi Hospital, Azienda Ospedaliera Universitaria Careggi, University of Florence, Florence, Italy; Center for the Study of Complex Dynamics, University of Florence, Florence, Italy; Laboratory of Genetics, Ente Ospedaliero Ospedali Galliera, Genova, Italy; Muscular and Neurodegenerative Disease Unit, Institute Gaslini, University of Genova, Genova, Italy; Laboratory of Genetics, Ente Ospedaliero Ospedali Galliera, Genova, Italy; Diagnostic Genetic Unit, Careggi Hospital, Azienda Ospedaliera Universitaria Careggi, Department of Medical and Surgical Critical Care, University of Florence, Florence, Italy
FastCall funding source(s)
Supported by Pierfranco e Luisa Mariani Foundation.

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