FastM statistics

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Citations per year

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Associated diseases

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FastM specifications

Information


Unique identifier OMICS_26750
Name FastM
Interface Web user interface
Restrictions to use License purchase required
Computer skills Basic
Stability Stable
Free trial Yes
Registration required Yes
Maintained Yes

Maintainers


  • person_outline GGA Team <>
  • person_outline Thomas Werne <>

Additional information


FastM is part of GEMS Launcher, which is part of Genomatix Software Suite. http://www.genomatix.de/online_help/help_fastm/fastm_help.html

Publication for FastM

FastM in pipeline

2016
PMCID: 4722141
PMID: 26834718
DOI: 10.3389/fmicb.2015.01567

[…] was created., for the identification of nob in the dataset, suitable genera covered by the respective qpcr primer pairs for ns and nb were identified with the genomatix software suite using the fastm and modelinspector tool (). otus affiliated exclusively with those genera were then extracted from the 16s rrna dataset. for reference sequences, the rdp-classifier (with 16s rrna training set […]


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FastM in publications

 (11)
PMCID: 4939949
PMID: 27400380
DOI: 10.1371/journal.pcbi.1004991

[…] measured by sequence similarity) of the query reference. given the reference sequence, individual ngs reads can be aligned against it using alignment programs such as bowtie [], bwa [], blast [], fastm [], rapsearch [,], and diamond []. alternatively, the individual reads can be assembled into longer contig sequences using de novo assembly tools prior to the alignment [,]. long contigs […]

PMCID: 4722141
PMID: 26834718
DOI: 10.3389/fmicb.2015.01567

[…] was created., for the identification of nob in the dataset, suitable genera covered by the respective qpcr primer pairs for ns and nb were identified with the genomatix software suite using the fastm and modelinspector tool (). otus affiliated exclusively with those genera were then extracted from the 16s rrna dataset. for reference sequences, the rdp-classifier (with 16s rrna training set […]

PMCID: 4878404
PMID: 26120963
DOI: 10.1038/nn.4054

[…] intracellular domain (p75icd). nuclear p-smad2 and neurocan expression were reduced in wt astrocytes treated with γ-secretase inhibitors (, ). in p75ntr−/− astrocytes, transient transfection of p75-fastm, a p75ntr mutant resistant to γ-secretase cleavage, increased p-smad2 nuclear accumulation by 2.8 fold upon tgf-β treatment compared to 4.7 and 7.7 fold increase induced by full-length p75ntr […]

PMCID: 4387276
PMID: 25762102
DOI: 10.1007/s10646-015-1426-8

[…] for economic cooperation and development) cdin (deutsches institut für normung) dusepa/epa (united states environmental protection agency) eafnor (association française de normalisation) fastm (american society for testing and materials), aiso (international organization for standardization), boecd (organization for economic cooperation and development), cdin (deutsches institut […]

PMCID: 4351999
PMID: 25749323
DOI: 10.1371/journal.pone.0118967

[…] of databases (, , , , ). the two primer sets (1406f/23sr and itsf/itsreub) that produced the best results from ecopcr were evaluated further for their coverage and specificity to bacteria using the fastm and modelinspector tool, implemented in the genomatix software suite (http://www.genomatix.de/solutions/genomatix-software-suite.html). some archaeal sequences were also contained […]


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FastM institution(s)
Institute of Mammalian Genetics, GSF-National Research Center for Environment and Health, Neuherberg, Germany; Genomatix Software GmBH, Munchen, Germany
FastM funding source(s)
Supported by BMBF project FANGREB0311641 and by EU grant BI04-CT95-0226 (TRADAT).

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