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FASTM specifications


Unique identifier OMICS_19708
Interface Web user interface
Restrictions to use None
Input data A set of nucleotide sequence fragments.
Input format FASTA
Computer skills Basic
Stability Stable
Maintained Yes


  • person_outline William Pearson

FASTM citation


Metagenome and Metatranscriptome Analyses Using Protein Family Profiles

PLoS Comput Biol
PMCID: 4939949
PMID: 27400380
DOI: 10.1371/journal.pcbi.1004991

[…] (as measured by sequence similarity) of the query reference. Given the reference sequence, individual NGS reads can be aligned against it using alignment programs such as Bowtie [], BWA [], BLAST [], FASTM [], RAPSearch [,], and DIAMOND []. Alternatively, the individual reads can be assembled into longer contig sequences using de novo assembly tools prior to the alignment [,]. Long contigs contain […]

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