FASTmC statistics

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Associated diseases

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FASTmC specifications

Information


Unique identifier OMICS_10589
Name FASTmC
Interface Web user interface
Restrictions to use None
Input format FASTQ
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Robert Schmitz <>

Publication for FASTmC

FASTmC in publications

 (3)
PMCID: 5480990
PMID: 28640886
DOI: 10.1371/journal.pone.0179821

[…] dna was isolated from leaf tissue and methylc-seq libraries were prepared for each species as was previously described [, ]. as no sequenced and assembled genome exists for lupinus spp., we used fastmc, which is a non-reference-based approach to estimate the levels of dna methylation in the cg, chg (h = a|c|t) and chh sequence contexts []. briefly, linear models were created […]

PMCID: 5400375
PMID: 28025279
DOI: 10.1093/molbev/msw264

[…] or individuals of a population, as genome-wide reductions or gains in dna methylation are not observed (). for the remaining species, genome-wide levels of dna methylation were estimated using fastmc and the—animal model (). all sequencing data can be accessed from gene expression omnibus (geo) using accession gse83497., cg dna methylation in insects is enriched in coding sequences (see ; […]

PMCID: 5015934
PMID: 27402357
DOI: 10.1534/g3.116.030262

[…] to remove low quality reads using methylpy (). a second replicate of control samples and seedlings treated with 100 µm of aza or zeb were lightly sequenced (table s2) and run through the web tool fastmc, a tool for genome-wide estimation of dna methylation levels ()., genome-wide methylation levels from deeply sequenced samples were calculated using weighted methylation (). bedtools () […]


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FASTmC institution(s)
Department of Genetics, University of Georgia, Athens, GA, USA
FASTmC funding source(s)
The National Science Foundation (MCB-1339194); the National Institutes of Health (R00GM100000)

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